Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

9353256 .. 9353933

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTCCGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCCGATCGCCACCCCGGCCTTCCGCGCCTTCATCAACCACATCACCGACACAGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTCGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGCCGTCGCAATCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGTCGTCCTCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGCACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGATCCGTCCTCATCTCCGCTCTCATGGTCGGAGTCGCCGTCGTCCTCGTTCACGGTGCCATTAGGGTTCCCGAGGATCTGTTCTTGGATGAGCAAGACACTTCCGCCTCCACCGGATTCCTATCATTCCTCAACGGCGCCGCCTCCAATGTCGCCGCCGCCACCGCCCCGGCCATGGCCGCTGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

225

Amino Acids

23.88

Weight (kDa)

8.16

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 193	2.4e-51	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	539, 620
AccBSI	CCGCTC	2 cut(s)	189, 503
AccII	CGCG	4 cut(s)	111, 234, 261, 672
AclWI	GGATC	5 cut(s)	54, 67, 480, 493, 567
AcoI	YGGCCR	3 cut(s)	406, 654, 660
AcyI	GRCGYC	2 cut(s)	222, 621
AfiI	CCNNNNNNNGG	2 cut(s)	169, 658
AjnI	CCWGG	3 cut(s)	72, 167, 353
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	5 cut(s)	54, 67, 480, 493, 567
Ama87I	CYCGRG	2 cut(s)	206, 554
ApeKI	GCWGC	1 cut(s)	665
AspLEI	GCGC	3 cut(s)	113, 162, 623
AspS9I	GGNCC	2 cut(s)	171, 439
AsuC2I	CCSGG	2 cut(s)	101, 653
AsuHPI	GGTGA	3 cut(s)	121, 301, 466
AvaI	CYCGRG	2 cut(s)	206, 554
BamHI	GGATCC	2 cut(s)	59, 485
BanI	GGYRCC	2 cut(s)	539, 620
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	451, 460
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	5 cut(s)	163, 263, 281, 506, 634
BciT130I	CCWGG	3 cut(s)	74, 169, 355
BcnI	CCSGG	2 cut(s)	101, 653
BcoDI	GTCTC	1 cut(s)	304
BfoI	RGCGCY	2 cut(s)	163, 624
BglI	GCCNNNNNGGC	2 cut(s)	101, 447
Bme1390I	CCNGG	5 cut(s)	74, 101, 169, 355, 653
BmeT110I	CYCGRG	2 cut(s)	206, 554
BmgT120I	GGNCC	2 cut(s)	171, 439
BmiI	GGNNCC	5 cut(s)	61, 487, 541, 552, 622
BmrFI	CCNGG	5 cut(s)	74, 101, 169, 355, 653
BpiI	GAAGAC	2 cut(s)	451, 460
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	101, 653
BsaBI	GATNNNNATC	1 cut(s)	604
BsaHI	GRCGYC	2 cut(s)	222, 621
BsaJI	CCNNGG	8 cut(s)	72, 99, 167, 168, 337, 555, 651, 657
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 137, 167, 305, 335, 507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 658
Bse8I	GATNNNNATC	1 cut(s)	604
BseBI	CCWGG	3 cut(s)	74, 169, 355
BseDI	CCNNGG	8 cut(s)	72, 99, 167, 168, 337, 555, 651, 657
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	169, 658
BseMII	CTCAG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	326, 335
BseX3I	CGGCCG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	652
BseYI	CCCAGC	2 cut(s)	81, 156
Bsh1236I	CGCG	4 cut(s)	111, 234, 261, 672
Bsh1285I	CGRYCG	3 cut(s)	93, 187, 409
BshNI	GGYRCC	2 cut(s)	539, 620
BsiEI	CGRYCG	3 cut(s)	93, 187, 409
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	206, 554
BsiSI	CCGG	4 cut(s)	57, 101, 597, 653
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	169, 658
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	55
BsoBI	CYCGRG	2 cut(s)	206, 554
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
Bsp19I	CCATGG	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	4 cut(s)	111, 234, 261, 672
BspLI	GGNNCC	5 cut(s)	61, 487, 541, 552, 622
BspPI	GGATC	5 cut(s)	54, 67, 480, 493, 567
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	539, 620
BsrBI	CCGCTC	2 cut(s)	189, 503
BssECI	CCNNGG	8 cut(s)	72, 99, 167, 168, 337, 555, 651, 657
BssMI	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
BssNI	GRCGYC	2 cut(s)	222, 621
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	3 cut(s)	74, 169, 355
Bst4CI	ACNGT	3 cut(s)	13, 139, 539
Bst6I	CTCTTC	3 cut(s)	311, 365, 377
BstACI	GRCGYC	2 cut(s)	222, 621
BstC8I	GCNNGC	2 cut(s)	180, 670
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	4 cut(s)	111, 234, 261, 672
BstH2I	RGCGCY	2 cut(s)	163, 624
BstHHI	GCGC	3 cut(s)	113, 162, 623
BstKTI	GATC	6 cut(s)	33, 62, 93, 388, 488, 562
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
BstMCI	CGRYCG	3 cut(s)	93, 187, 409
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 110, 179, 281, 447, 647, 662
BstNI	CCWGG	3 cut(s)	74, 169, 355
BstSCI	CCNGG	5 cut(s)	72, 99, 167, 353, 651
BstUI	CGCG	4 cut(s)	111, 234, 261, 672
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	2 cut(s)	451, 460
BstX2I	RGATCY	3 cut(s)	59, 485, 559
BstYI	RGATCY	3 cut(s)	59, 485, 559
BstZI	CGGCCG	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	180, 670
CfoI	GCGC	3 cut(s)	113, 162, 623
Cfr13I	GGNCC	2 cut(s)	171, 439
CseI	GACGC	4 cut(s)	223, 230, 250, 445
CviAII	CATG	2 cut(s)	508, 658
DdeI	CTNAG	1 cut(s)	452
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	6 cut(s)	32, 61, 92, 387, 487, 561
DpnII	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
EaeI	YGGCCR	3 cut(s)	406, 654, 660
EagI	CGGCCG	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	311, 365, 377
EarI	CTCTTC	3 cut(s)	311, 365, 377
EciI	GGCGGA	3 cut(s)	181, 365, 577
Ecl136II	GAGCTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	657
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	178
Eco88I	CYCGRG	2 cut(s)	206, 554
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	72, 167, 353
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	2 cut(s)	511, 661
FaiI	YATR	2 cut(s)	509, 659
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	507, 657
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	180
GlaI	GCGC	3 cut(s)	112, 161, 622
GsaI	CCCAGC	2 cut(s)	85, 160
HaeII	RGCGCY	2 cut(s)	163, 624
HapII	CCGG	4 cut(s)	57, 101, 597, 653
HgaI	GACGC	4 cut(s)	223, 230, 250, 445
HhaI	GCGC	3 cut(s)	113, 162, 623
Hin1I	GRCGYC	2 cut(s)	222, 621
Hin1II	CATG	2 cut(s)	511, 661
Hin6I	GCGC	3 cut(s)	111, 160, 621
HinP1I	GCGC	3 cut(s)	111, 160, 621
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	4 cut(s)	68, 209, 516, 600
HpaII	CCGG	4 cut(s)	57, 101, 597, 653
HphI	GGTGA	3 cut(s)	121, 301, 466
Hpy166II	GTNNAC	3 cut(s)	6, 265, 535
Hpy188I	TCNGA	6 cut(s)	90, 220, 385, 421, 485, 515
Hpy188III	TCNNGA	2 cut(s)	28, 554
Hpy8I	GTNNAC	3 cut(s)	6, 265, 535
Hpy99I	CGWCG	9 cut(s)	50, 224, 284, 296, 332, 449, 467, 485, 527
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 328
HpyCH4III	ACNGT	3 cut(s)	13, 139, 539
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 110, 179, 281, 447, 647, 662
HpyF3I	CTNAG	1 cut(s)	452
Hsp92I	GRCGYC	2 cut(s)	222, 621
Hsp92II	CATG	2 cut(s)	511, 661
HspAI	GCGC	3 cut(s)	111, 160, 621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	652
MalI	GATC	6 cut(s)	32, 61, 92, 387, 487, 561
MbiI	CCGCTC	2 cut(s)	189, 503
MboI	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
MboII	GAAGA	6 cut(s)	298, 352, 364, 394, 451, 460
MflI	RGATCY	3 cut(s)	59, 485, 559
MhlI	GDGCHC	1 cut(s)	180
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	3 cut(s)	77, 218, 525
MmeI	TCCRAC	4 cut(s)	243, 444, 463, 493
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	4 cut(s)	57, 101, 597, 653
MspR9I	CCNGG	5 cut(s)	74, 101, 169, 355, 653
MvaI	CCWGG	3 cut(s)	74, 169, 355
MvnI	CGCG	4 cut(s)	111, 234, 261, 672
MwoI	GCNNNNNNNGC	7 cut(s)	101, 110, 179, 281, 447, 647, 662
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	2 cut(s)	101, 653
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
NlaIII	CATG	2 cut(s)	511, 661
NlaIV	GGNNCC	5 cut(s)	61, 487, 541, 552, 622
NmeAIII	GCCGAG	2 cut(s)	199, 318
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	4 cut(s)	204, 288, 453, 519
PfeI	GAWTC	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	137
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	3 cut(s)	76, 217, 524
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	3 cut(s)	76, 217, 524
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	72, 167, 353
PspFI	CCCAGC	2 cut(s)	81, 156
PspGI	CCWGG	3 cut(s)	72, 167, 353
PspN4I	GGNNCC	5 cut(s)	61, 487, 541, 552, 622
PspPI	GGNCC	2 cut(s)	171, 439
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	3 cut(s)	59, 485, 559
PsyI	GACNNNGTC	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	365
Sau3AI	GATC	6 cut(s)	30, 59, 90, 385, 485, 559
Sau96I	GGNCC	2 cut(s)	171, 439
SchI	GAGTC	3 cut(s)	77, 218, 525
ScrFI	CCNGG	5 cut(s)	74, 101, 169, 355, 653
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	44, 180, 273, 372, 479
SfiI	GGCCNNNNNGGCC	1 cut(s)	447
SfoI	GGCGCC	1 cut(s)	622
SseBI	AGGCCT	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	5 cut(s)	72, 99, 167, 353, 651
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	3 cut(s)	13, 139, 539
TaqI	TCGA	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	3 cut(s)	34, 469, 478
Tth111I	GACNNNGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.