Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

25782771 .. 25784593

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG158700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTGTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGTGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGTTCTTCCTCTACTTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGGTGTGTTACAAGGGATTGAAGAGATTTCATACTGTGTTTGTAGAGAGCGAGGTTGCGAATCACCTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

9.75

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 160	3.5e-36	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	2 cut(s)	111, 261
AclWI	GGATC	3 cut(s)	54, 67, 98
AcoI	YGGCCR	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
AgsI	TTSAA	1 cut(s)	493
AjnI	CCWGG	4 cut(s)	72, 99, 167, 341
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	54, 67, 98
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	8 cut(s)	75, 102, 148, 171, 328, 394, 427, 436
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	2 cut(s)	171, 427
AsuHPI	GGTGA	4 cut(s)	121, 301, 454, 527
AvaI	CYCGRG	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	439, 448
BbvCI	CCTCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	3 cut(s)	163, 260, 281
BciT130I	CCWGG	4 cut(s)	74, 101, 169, 343
BcoDI	GTCTC	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	101, 435
BisI	GCNGC	4 cut(s)	51, 54, 163, 339
BlsI	GCNGC	4 cut(s)	52, 55, 164, 340
Bme1390I	CCNGG	4 cut(s)	74, 101, 169, 343
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	171, 427
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	74, 101, 169, 343
BpiI	GAAGAC	2 cut(s)	439, 448
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 325, 538
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 137, 167, 305, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BseBI	CCWGG	4 cut(s)	74, 101, 169, 343
BseDI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 325, 538
BseLI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	394
BseYI	CCCAGC	2 cut(s)	81, 156
Bsh1236I	CGCG	2 cut(s)	111, 261
Bsh1285I	CGRYCG	2 cut(s)	187, 397
BshFI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BsiEI	CGRYCG	2 cut(s)	187, 397
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	57, 397
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	30, 59, 90, 373
BspANI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	111, 261
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	54, 67, 98
BsrBI	CCGCTC	1 cut(s)	189
BssECI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 325, 538
BssMI	GATC	4 cut(s)	30, 59, 90, 373
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	4 cut(s)	74, 101, 169, 343
Bst4CI	ACNGT	3 cut(s)	13, 139, 508
Bst6I	CTCTTC	2 cut(s)	311, 488
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	440
BstFNI	CGCG	2 cut(s)	111, 261
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	4 cut(s)	33, 62, 93, 376
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	4 cut(s)	30, 59, 90, 373
BstMCI	CGRYCG	2 cut(s)	187, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
BstNI	CCWGG	4 cut(s)	74, 101, 169, 343
BstSCI	CCNGG	4 cut(s)	72, 99, 167, 341
BstUI	CGCG	2 cut(s)	111, 261
BstV2I	GAAGAC	2 cut(s)	439, 448
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	113, 162
Cfr13I	GGNCC	2 cut(s)	171, 427
CseI	GACGC	3 cut(s)	230, 250, 433
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	4 cut(s)	32, 61, 92, 375
DpnII	GATC	4 cut(s)	30, 59, 90, 373
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	311, 488
EarI	CTCTTC	2 cut(s)	311, 488
EciI	GGCGGA	2 cut(s)	181, 353
EclXI	CGGCCG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	77
Eco52I	CGGCCG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	4 cut(s)	72, 99, 167, 341
Esp3I	CGTCTC	1 cut(s)	304
FaiI	YATR	1 cut(s)	504
FaqI	GGGAC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	51, 54, 163, 339
Fsp4HI	GCNGC	4 cut(s)	51, 54, 163, 339
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	4 cut(s)	51, 54, 163, 339
GsaI	CCCAGC	2 cut(s)	85, 160
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
HapII	CCGG	2 cut(s)	57, 397
HgaI	GACGC	3 cut(s)	230, 250, 433
HhaI	GCGC	2 cut(s)	113, 162
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	3 cut(s)	68, 209, 532
HpaII	CCGG	2 cut(s)	57, 397
HphI	GGTGA	4 cut(s)	121, 301, 454, 527
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	5 cut(s)	90, 220, 373, 409, 542
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 265
Hpy99I	CGWCG	7 cut(s)	224, 281, 284, 296, 437, 455, 473
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 328
HpyCH4III	ACNGT	3 cut(s)	13, 139, 508
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
HpyF3I	CTNAG	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	2 cut(s)	111, 160
Kzo9I	GATC	4 cut(s)	30, 59, 90, 373
LmnI	GCTCC	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	4 cut(s)	32, 61, 92, 375
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	30, 59, 90, 373
MboII	GAAGA	7 cut(s)	298, 340, 352, 382, 439, 448, 505
MflI	RGATCY	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	77, 218
MmeI	TCCRAC	2 cut(s)	243, 432
MspI	CCGG	2 cut(s)	57, 397
MspR9I	CCNGG	4 cut(s)	74, 101, 169, 343
MvaI	CCWGG	4 cut(s)	74, 101, 169, 343
MvnI	CGCG	2 cut(s)	111, 261
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
NdeII	GATC	4 cut(s)	30, 59, 90, 373
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	2 cut(s)	199, 306
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 288, 441
PfeI	GAWTC	1 cut(s)	532
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 55, 164, 340
PleI	GAGTC	2 cut(s)	76, 217
PpsI	GAGTC	2 cut(s)	76, 217
Psp6I	CCWGG	4 cut(s)	72, 99, 167, 341
PspFI	CCCAGC	2 cut(s)	81, 156
PspGI	CCWGG	4 cut(s)	72, 99, 167, 341
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	171, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	137
SatI	GCNGC	4 cut(s)	51, 54, 163, 339
Sau3AI	GATC	4 cut(s)	30, 59, 90, 373
Sau96I	GGNCC	2 cut(s)	171, 427
SchI	GAGTC	2 cut(s)	77, 218
ScrFI	CCNGG	4 cut(s)	74, 101, 169, 343
SetI	ASST	6 cut(s)	44, 180, 273, 467, 528, 540
SfiI	GGCCNNNNNGGCC	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	72, 99, 167, 341
TaaI	ACNGT	3 cut(s)	13, 139, 508
TaqI	TCGA	1 cut(s)	66
TauI	GCSGC	4 cut(s)	53, 56, 165, 341
TfiI	GAWTC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	106, 491
TspGWI	ACGGA	2 cut(s)	221, 457
Tth111I	GACNNNGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.