Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

74834351 .. 74835624

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAAGACTCTTATCTCTTTCTCTTCTTCTGGAACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTTCTCTTCTTCTGGAAAAATAAACCATCTCTCTCTCTCTCTCTCGTCTTACTGCATCTATTTCCATCATTCCTCCGATTCTTCAATCACAAATTCCCTTATAAACCCAAAAAGCTCTCTCCAGATCTTCACAAAAATACTTGATACAATTTCAGATCCCGATCCACCGGCAATGTCAACCACCGTCCCCCCGTCCTCCCGATCTCCACCACCTCTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATTAGCCTCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

21.69

Weight (kDa)

6.89

Isoelectric Point (pI)

104.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	437
AccII	CGCG	3 cut(s)	359, 482, 488
AclWI	GGATC	5 cut(s)	227, 233, 302, 315, 346
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	335, 417
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	4 cut(s)	320, 347, 415, 568
AluBI	AGCT	2 cut(s)	192, 426
AluI	AGCT	2 cut(s)	192, 426
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	5 cut(s)	227, 233, 302, 315, 346
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	6 cut(s)	323, 350, 396, 419, 555, 621
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	361, 410
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	369, 528
AvaI	CYCGRG	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	307
BccI	CCATC	4 cut(s)	45, 111, 150, 319
BceAI	ACGGC	3 cut(s)	411, 487, 508
BciT130I	CCWGG	4 cut(s)	322, 349, 417, 570
BcoDI	GTCTC	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	4 cut(s)	299, 302, 411, 566
BlsI	GCNGC	4 cut(s)	300, 303, 412, 567
Bme1390I	CCNGG	4 cut(s)	322, 349, 417, 570
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	35, 309
BmrFI	CCNGG	4 cut(s)	322, 349, 417, 570
BmsI	GCATC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	6 cut(s)	320, 334, 347, 415, 416, 552
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 532, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 417
Bse118I	RCCGGY	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	4 cut(s)	322, 349, 417, 570
BseDI	CCNNGG	6 cut(s)	320, 334, 347, 415, 416, 552
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	335, 417
BseMI	GCAATG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	64, 550
BseX3I	CGGCCG	1 cut(s)	621
BseYI	CCCAGC	2 cut(s)	329, 404
Bsh1236I	CGCG	3 cut(s)	359, 482, 488
Bsh1285I	CGRYCG	2 cut(s)	435, 624
BshFI	GGCC	6 cut(s)	325, 352, 398, 421, 557, 623
BsiEI	CGRYCG	2 cut(s)	435, 624
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	3 cut(s)	245, 305, 624
BslFI	GGGAC	2 cut(s)	248, 303
BslI	CCNNNNNNNGG	2 cut(s)	335, 417
BsmAI	GTCTC	1 cut(s)	531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	248, 303
BsnI	GGCC	6 cut(s)	325, 352, 398, 421, 557, 623
BsoBI	CYCGRG	1 cut(s)	454
Bsp143I	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
BspANI	GGCC	6 cut(s)	325, 352, 398, 421, 557, 623
BspFNI	CGCG	3 cut(s)	359, 482, 488
BspLI	GGNNCC	2 cut(s)	35, 309
BspPI	GGATC	5 cut(s)	227, 233, 302, 315, 346
BspQI	GCTCTTC	1 cut(s)	580
BsrBI	CCGCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	6 cut(s)	320, 334, 347, 415, 416, 552
BssMI	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
BssNI	GRCGYC	1 cut(s)	470
Bst2UI	CCWGG	4 cut(s)	322, 349, 417, 570
Bst4CI	ACNGT	2 cut(s)	262, 387
Bst6I	CTCTTC	5 cut(s)	29, 88, 538, 580, 592
BstACI	GRCGYC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	428
BstFNI	CGCG	3 cut(s)	359, 482, 488
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	361, 410
BstKTI	GATC	6 cut(s)	204, 235, 241, 281, 310, 341
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
BstMCI	CGRYCG	2 cut(s)	435, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 358, 427, 508
BstNI	CCWGG	4 cut(s)	322, 349, 417, 570
BstSCI	CCNGG	4 cut(s)	320, 347, 415, 568
BstUI	CGCG	3 cut(s)	359, 482, 488
BstX2I	RGATCY	3 cut(s)	201, 232, 307
BstYI	RGATCY	3 cut(s)	201, 232, 307
BstZI	CGGCCG	1 cut(s)	621
BsuRI	GGCC	6 cut(s)	325, 352, 398, 421, 557, 623
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	2 cut(s)	361, 410
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	3 cut(s)	471, 477, 478
DpnI	GATC	6 cut(s)	203, 234, 240, 280, 309, 340
DpnII	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
EaeI	YGGCCR	1 cut(s)	621
EagI	CGGCCG	1 cut(s)	621
Eam1104I	CTCTTC	5 cut(s)	29, 88, 538, 580, 592
EarI	CTCTTC	5 cut(s)	29, 88, 538, 580, 592
EciI	GGCGGA	2 cut(s)	429, 580
EclXI	CGGCCG	1 cut(s)	621
Eco147I	AGGCCT	1 cut(s)	325
Eco52I	CGGCCG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	4 cut(s)	320, 347, 415, 568
Esp3I	CGTCTC	1 cut(s)	531
FaiI	YATR	1 cut(s)	179
FaqI	GGGAC	2 cut(s)	248, 303
Fnu4HI	GCNGC	4 cut(s)	299, 302, 411, 566
Fsp4HI	GCNGC	4 cut(s)	299, 302, 411, 566
GlaI	GCGC	2 cut(s)	360, 409
GluI	GCNGC	4 cut(s)	299, 302, 411, 566
GsaI	CCCAGC	2 cut(s)	333, 408
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	6 cut(s)	325, 352, 398, 421, 557, 623
HapII	CCGG	3 cut(s)	245, 305, 624
HgaI	GACGC	3 cut(s)	471, 477, 478
HhaI	GCGC	2 cut(s)	361, 410
Hin1I	GRCGYC	1 cut(s)	470
Hin6I	GCGC	2 cut(s)	359, 408
HinP1I	GCGC	2 cut(s)	359, 408
HincII	GTYRAC	2 cut(s)	255, 492
HindII	GTYRAC	2 cut(s)	255, 492
HinfI	GANTC	4 cut(s)	8, 155, 316, 457
HpaII	CCGG	3 cut(s)	245, 305, 624
HphI	GGTGA	2 cut(s)	369, 528
Hpy166II	GTNNAC	2 cut(s)	255, 492
Hpy188I	TCNGA	6 cut(s)	154, 232, 338, 468, 600, 636
Hpy188III	TCNNGA	5 cut(s)	31, 90, 199, 236, 276
Hpy8I	GTNNAC	2 cut(s)	255, 492
Hpy99I	CGWCG	4 cut(s)	472, 508, 511, 523
HpyAV	CCTTC	5 cut(s)	363, 372, 453, 471, 555
HpyCH4III	ACNGT	2 cut(s)	262, 387
HpyCH4V	TGCA	2 cut(s)	4, 132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 358, 427, 508
Hsp92I	GRCGYC	1 cut(s)	470
HspAI	GCGC	2 cut(s)	359, 408
Kzo9I	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
LguI	GCTCTTC	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	442
LweI	GCATC	1 cut(s)	141
MalI	GATC	6 cut(s)	203, 234, 240, 280, 309, 340
MbiI	CCGCTC	1 cut(s)	437
MboI	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
MflI	RGATCY	3 cut(s)	201, 232, 307
MluCI	AATT	2 cut(s)	169, 225
MlyI	GAGTC	3 cut(s)	2, 325, 466
MmeI	TCCRAC	1 cut(s)	491
MspI	CCGG	3 cut(s)	245, 305, 624
MspR9I	CCNGG	4 cut(s)	322, 349, 417, 570
MvaI	CCWGG	4 cut(s)	322, 349, 417, 570
MvnI	CGCG	3 cut(s)	359, 482, 488
MwoI	GCNNNNNNNGC	4 cut(s)	349, 358, 427, 508
NdeII	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
NlaIV	GGNNCC	2 cut(s)	35, 309
NmeAIII	GCCGAG	2 cut(s)	447, 533
PasI	CCCWGGG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	452, 515
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	300, 303, 412, 567
PleI	GAGTC	3 cut(s)	2, 324, 465
PpsI	GAGTC	3 cut(s)	2, 324, 465
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	320, 347, 415, 568
PspFI	CCCAGC	2 cut(s)	329, 404
PspGI	CCWGG	4 cut(s)	320, 347, 415, 568
PspN4I	GGNNCC	2 cut(s)	35, 309
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	201, 232, 307
PsyI	GACNNNGTC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	580
SatI	GCNGC	4 cut(s)	299, 302, 411, 566
Sau3AI	GATC	6 cut(s)	201, 232, 238, 278, 307, 338
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	3 cut(s)	2, 325, 466
ScrFI	CCNGG	4 cut(s)	322, 349, 417, 570
SetI	ASST	5 cut(s)	194, 292, 428, 500, 587
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	169, 225
SseBI	AGGCCT	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	4 cut(s)	320, 347, 415, 568
TaaI	ACNGT	2 cut(s)	262, 387
TaqI	TCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	169, 225
TauI	GCSGC	4 cut(s)	301, 304, 413, 568
TfiI	GAWTC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	354
Tth111I	GACNNNGTC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.