Rh3DG115800

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002183
Physical Location & Seq
Forward (+)
9636188 .. 9637140
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG115800.1

Sequence Viewer

Length: 291 bp
ATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTCCGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCCGATCGCCACCCCGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTCGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCAAGAACTACTCCTACTTCCGCATACAAATTGTAATCGCCACAGATCATTGA

Protein Analysis

96

Amino Acids

10.52

Weight (kDa)

9.97

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 50 - 88 5.4e-12 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 2 cut(s) 111, 234
AclWI GGATC 2 cut(s) 54, 67
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 2 cut(s) 72, 167
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 2 cut(s) 54, 67
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 4 cut(s) 75, 102, 148, 171
AspLEI GCGC 2 cut(s) 113, 162
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 206
BamHI GGATCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 74, 169
BcnI CCSGG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 3 cut(s) 51, 54, 163
BlsI GCNGC 3 cut(s) 52, 55, 164
Bme1390I CCNGG 3 cut(s) 74, 101, 169
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 3 cut(s) 74, 101, 169
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 72, 99, 167, 168
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 74, 169
BseDI CCNNGG 4 cut(s) 72, 99, 167, 168
BseLI CCNNNNNNNGG 1 cut(s) 169
BseYI CCCAGC 2 cut(s) 81, 156
Bsh1236I CGCG 2 cut(s) 111, 234
Bsh1285I CGRYCG 2 cut(s) 93, 187
BshFI GGCC 4 cut(s) 77, 104, 150, 173
BsiEI CGRYCG 2 cut(s) 93, 187
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 57, 101
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 4 cut(s) 77, 104, 150, 173
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 4 cut(s) 30, 59, 90, 283
BspANI GGCC 4 cut(s) 77, 104, 150, 173
BspFNI CGCG 2 cut(s) 111, 234
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 54, 67
BsrBI CCGCTC 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 72, 99, 167, 168
BssMI GATC 4 cut(s) 30, 59, 90, 283
BssNI GRCGYC 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 74, 169
Bst4CI ACNGT 2 cut(s) 13, 139
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 180
BstFNI CGCG 2 cut(s) 111, 234
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 2 cut(s) 113, 162
BstKTI GATC 4 cut(s) 33, 62, 93, 286
BstMBI GATC 4 cut(s) 30, 59, 90, 283
BstMCI CGRYCG 2 cut(s) 93, 187
BstMWI GCNNNNNNNGC 3 cut(s) 101, 110, 179
BstNI CCWGG 2 cut(s) 74, 169
BstSCI CCNGG 3 cut(s) 72, 99, 167
BstUI CGCG 2 cut(s) 111, 234
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 4 cut(s) 77, 104, 150, 173
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 2 cut(s) 113, 162
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 2 cut(s) 223, 230
CviJI RGCY 7 cut(s) 77, 85, 104, 150, 173, 178, 205
CviKI_1 RGCY 7 cut(s) 77, 85, 104, 150, 173, 178, 205
DpnI GATC 4 cut(s) 32, 61, 92, 285
DpnII GATC 4 cut(s) 30, 59, 90, 283
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 72, 167
EcoT38I GRGCYC 1 cut(s) 180
FaiI YATR 1 cut(s) 263
FaqI GGGAC 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 51, 54, 163
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 51, 54, 163
GlaI GCGC 2 cut(s) 112, 161
GluI GCNGC 3 cut(s) 51, 54, 163
GsaI CCCAGC 2 cut(s) 85, 160
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 4 cut(s) 77, 104, 150, 173
HapII CCGG 2 cut(s) 57, 101
HgaI GACGC 2 cut(s) 223, 230
HhaI GCGC 2 cut(s) 113, 162
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 2 cut(s) 111, 160
HinP1I GCGC 2 cut(s) 111, 160
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 68, 209
HpaII CCGG 2 cut(s) 57, 101
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 90, 220
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 50, 224
HpyAV CCTTC 4 cut(s) 115, 124, 205, 223
HpyCH4III ACNGT 2 cut(s) 13, 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 110, 179
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 2 cut(s) 111, 160
Kzo9I GATC 4 cut(s) 30, 59, 90, 283
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 8 cut(s) 59, 70, 86, 95, 114, 154, 170, 181
MalI GATC 4 cut(s) 32, 61, 92, 285
MbiI CCGCTC 1 cut(s) 189
MboI GATC 4 cut(s) 30, 59, 90, 283
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 267
MlyI GAGTC 2 cut(s) 77, 218
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 35, 52, 88, 96, 161, 239
MspI CCGG 2 cut(s) 57, 101
MspR9I CCNGG 3 cut(s) 74, 101, 169
MvaI CCWGG 2 cut(s) 74, 169
MvnI CGCG 2 cut(s) 111, 234
MwoI GCNNNNNNNGC 3 cut(s) 101, 110, 179
NciI CCSGG 1 cut(s) 101
NdeII GATC 4 cut(s) 30, 59, 90, 283
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 199
PasI CCCWGGG 1 cut(s) 168
PceI AGGCCT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 52, 55, 164
Ple19I CGATCG 1 cut(s) 93
PleI GAGTC 2 cut(s) 76, 217
PpsI GAGTC 2 cut(s) 76, 217
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 72, 167
PspFI CCCAGC 2 cut(s) 81, 156
PspGI CCWGG 2 cut(s) 72, 167
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 171
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 137
PvuI CGATCG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 180
SatI GCNGC 3 cut(s) 51, 54, 163
Sau3AI GATC 4 cut(s) 30, 59, 90, 283
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 2 cut(s) 77, 218
ScrFI CCNGG 3 cut(s) 74, 101, 169
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 44, 180
Sse9I AATT 1 cut(s) 267
SseBI AGGCCT 1 cut(s) 77
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 72, 99, 167
TaaI ACNGT 2 cut(s) 13, 139
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 267
TauI GCSGC 3 cut(s) 53, 56, 165
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.