Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

50168814 .. 50171815

Gene Structure 3002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0391100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGAAATTACTATGACATTGACGATATTCTTGCCGAGGAAGAGCTTGTCTCAGTTGTTTTCCAGAAAGGAGCAAATGGGGTTGGAATTGATCCTAGTGCTGAAGCCTATAGTGTCGAACCAGGTTCAAGGGTCAAGCTGCCGTTCTGGCTTGCTTATGAATTACACGCAAGACAAGTAGTGACGATGAAGCTTCCTGCGTGTTTCAATCAACAAACAAGGCTGGAACTGGGGGCTGATGGAAAAGCTGTGGATTTGAGATCTCGATGTCTATACTTCTATGAATTTGGATGCAAGATAGCACCACTGGTTGGTGATAGAGACATGGGATCATTCCTGTTATCTGCATTCAGAAACAGGTATCAGGAAGTCCTGGCCAAGGCACATTCTGCAGCATATACAGCAGCTTCAAAACTCTTGACGCTCTTAACAAAAGAAGAAATCAACTTGTATGAGGCAGCTCAATCCTCCATGGCAGCCTTTAAGAAGTGGCGGATGGGTGGCCCGAGATTGCAGAGAGCTTCCGTACTTGGGAGGAAGAGGAAATCAACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.66

Weight (kDa)

8.93

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF3_N	PF22466	5 - 55	2.5e-08	PSF3 N-terminal domain
Sld5	PF05916	70 - 165	4.4e-12	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	1 cut(s)	493
AclWI	GGATC	2 cut(s)	86, 337
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
AgsI	TTSAA	3 cut(s)	129, 208, 411
AjnI	CCWGG	2 cut(s)	121, 372
AluBI	AGCT	7 cut(s)	46, 139, 193, 248, 407, 461, 521
AluI	AGCT	7 cut(s)	46, 139, 193, 248, 407, 461, 521
Alw26I	GTCTC	2 cut(s)	55, 315
AlwI	GGATC	2 cut(s)	86, 337
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	2 cut(s)	375, 502
ApeKI	GCWGC	5 cut(s)	139, 392, 404, 458, 476
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	126, 404, 416, 470, 488
BccI	CCATC	2 cut(s)	233, 490
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	2 cut(s)	123, 374
BcoDI	GTCTC	2 cut(s)	55, 315
BfaI	CTAG	2 cut(s)	96, 556
BfmI	CTRYAG	2 cut(s)	109, 390
BglI	GCCNNNNNGGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
BlsI	GCNGC	5 cut(s)	141, 394, 406, 460, 478
Bme1390I	CCNGG	2 cut(s)	123, 374
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	123, 374
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BsaJI	CCNNGG	3 cut(s)	36, 378, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 379, 531
Bse1I	ACTGG	2 cut(s)	234, 312
BseBI	CCWGG	2 cut(s)	123, 374
BseDI	CCNNGG	3 cut(s)	36, 378, 471
BseGI	GGATG	2 cut(s)	296, 501
BseLI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	234, 312
BseXI	GCAGC	5 cut(s)	126, 404, 416, 470, 488
BshFI	GGCC	2 cut(s)	377, 504
BsiHKCI	CYCGRG	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
BsmAI	GTCTC	2 cut(s)	55, 315
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	377, 504
BsoBI	CYCGRG	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	91, 260, 329
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	493
BspANI	GGCC	2 cut(s)	377, 504
BspCNI	CTCAG	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	2 cut(s)	86, 337
BspQI	GCTCTTC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	234, 312
BssECI	CCNNGG	3 cut(s)	36, 378, 471
BssMI	GATC	3 cut(s)	91, 260, 329
BssT1I	CCWWGG	2 cut(s)	378, 471
Bst2UI	CCWGG	2 cut(s)	123, 374
Bst6I	CTCTTC	2 cut(s)	36, 533
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	471
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	296, 501
BstKTI	GATC	3 cut(s)	94, 263, 332
BstMAI	GTCTC	2 cut(s)	55, 315
BstMBI	GATC	3 cut(s)	91, 260, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
BstNI	CCWGG	2 cut(s)	123, 374
BstSCI	CCNGG	2 cut(s)	121, 372
BstSFI	CTRYAG	2 cut(s)	109, 390
BstV1I	GCAGC	5 cut(s)	126, 404, 416, 470, 488
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	377, 504
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	296, 501
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	2 cut(s)	325, 472
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	3 cut(s)	93, 262, 331
DpnII	GATC	3 cut(s)	91, 260, 329
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	36, 533
EarI	CTCTTC	2 cut(s)	36, 533
EciI	GGCGGA	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	378, 471
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	121, 372
EcoT14I	CCWWGG	2 cut(s)	378, 471
ErhI	CCWWGG	2 cut(s)	378, 471
FaeI	CATG	2 cut(s)	328, 475
FatI	CATG	2 cut(s)	324, 471
Fnu4HI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
FokI	GGATG	2 cut(s)	303, 508
Fsp4HI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
FspBI	CTAG	2 cut(s)	96, 556
GluI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
HaeIII	GGCC	2 cut(s)	377, 504
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	328, 475
HindIII	AAGCTT	1 cut(s)	191
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	4 cut(s)	64, 264, 365, 418
HpyCH4V	TGCA	4 cut(s)	294, 347, 392, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	328, 475
Kzo9I	GATC	3 cut(s)	91, 260, 329
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	5 cut(s)	126, 404, 416, 470, 488
LweI	GCATC	1 cut(s)	281
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	2 cut(s)	96, 556
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	93, 262, 331
MboI	GATC	3 cut(s)	91, 260, 329
MboII	GAAGA	3 cut(s)	53, 449, 550
MflI	RGATCY	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	7, 87, 161, 284
MluNI	TGGCCA	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	31, 448, 478, 528, 534
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	428, 483
Msp20I	TGGCCA	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	123, 374
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	123, 374
MwoI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	91, 260, 329
NlaIII	CATG	2 cut(s)	328, 475
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	141, 394, 406, 460, 478
Psp6I	CCWGG	2 cut(s)	121, 372
PspGI	CCWGG	2 cut(s)	121, 372
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	428, 483
SatI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
Sau3AI	GATC	3 cut(s)	91, 260, 329
Sau96I	GGNCC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	123, 374
SetI	ASST	9 cut(s)	48, 127, 141, 195, 250, 362, 409, 463, 523
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	109, 390
Sse9I	AATT	4 cut(s)	7, 87, 161, 284
SsiI	CCGC	1 cut(s)	493
SspMI	CTAG	2 cut(s)	96, 556
StyD4I	CCNGG	2 cut(s)	121, 372
StyI	CCWWGG	2 cut(s)	378, 471
TaqI	TCGA	2 cut(s)	117, 265
TasI	AATT	4 cut(s)	7, 87, 161, 284
Tru1I	TTAA	2 cut(s)	428, 483
Tru9I	TTAA	2 cut(s)	428, 483
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	5 cut(s)	139, 392, 404, 458, 476
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	174, 203, 297
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	2 cut(s)	96, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.