Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010437.1

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

20548 .. 21237

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010437.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtcaaccaccgtcccaaccgtcctcctgatctccaccacctctgtcgccgctgccggatccatcgagtcccaggcctcccagccttggatcgccaccctggccttccgcgccttcatcaaccacatcaccgacaccgtccgcaacggcctctcccagcgccggcccttggccgagcttgccgaccgctccgccttcgacaagctcgagtccttctccgacgccaccctccgcgtccgcaagaactactcctacttccgcgtcgactacctcgccgtcgtcgcccttatcgtcgccgtctccctcggccgcctcgccgcctggctcttcctctacctcttccgcccctccgatcagcccctcattatcttcggctggactttctccgacacccaaaccctaatgggcctcgtcggcctcagcgtcttcgtcgtcttcctcacctccatcgggcaagggattgaagagatttcatactgtgtttgtagagagcgaggttgcgaatcacctacgatgaaagaagccatcgaccatcaaaactcgttcctcgtgcttctacccgagaccatggagaagctccagcgacaacacaatcaggtaccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

202

Amino Acids

22.59

Weight (kDa)

6.29

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	3 cut(s)	111, 234, 261
AclWI	GGATC	3 cut(s)	54, 67, 98
AcoI	YGGCCR	2 cut(s)	171, 307
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	4 cut(s)	87, 162, 169, 450
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	72, 99, 320
AluBI	AGCT	3 cut(s)	178, 205, 577
AluI	AGCT	3 cut(s)	178, 205, 577
Alw26I	GTCTC	2 cut(s)	304, 557
AlwI	GGATC	3 cut(s)	54, 67, 98
Ama87I	CYCGRG	2 cut(s)	206, 560
AoxI	GGCC	8 cut(s)	75, 102, 148, 164, 171, 307, 406, 415
ApeKI	GCWGC	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	598
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	2 cut(s)	165, 406
AsuHPI	GGTGA	3 cut(s)	121, 433, 498
AvaI	CYCGRG	2 cut(s)	206, 560
BamHI	GGATCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	418, 427
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	71, 455, 533, 540
BceAI	ACGGC	3 cut(s)	163, 260, 281
BciT130I	CCWGG	3 cut(s)	74, 101, 322
BcoDI	GTCTC	2 cut(s)	304, 557
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	101, 414
BisI	GCNGC	4 cut(s)	51, 54, 310, 318
BlsI	GCNGC	4 cut(s)	52, 55, 311, 319
Bme1390I	CCNGG	3 cut(s)	74, 101, 322
BmeT110I	CYCGRG	2 cut(s)	206, 560
BmgT120I	GGNCC	2 cut(s)	165, 406
BmiI	GGNNCC	2 cut(s)	61, 600
BmrFI	CCNGG	3 cut(s)	74, 101, 322
BpiI	GAAGAC	2 cut(s)	418, 427
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	6 cut(s)	72, 86, 99, 168, 304, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 162, 169, 450
Bse118I	RCCGGY	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	74, 101, 322
BseDI	CCNNGG	6 cut(s)	72, 86, 99, 168, 304, 567
BseLI	CCNNNNNNNGG	4 cut(s)	87, 162, 169, 450
BseMII	CTCAG	1 cut(s)	433
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	81, 156
Bsh1236I	CGCG	3 cut(s)	111, 234, 261
Bsh1285I	CGRYCG	2 cut(s)	187, 310
BshFI	GGCC	8 cut(s)	77, 104, 150, 166, 173, 309, 408, 417
BshNI	GGYRCC	1 cut(s)	598
BsiEI	CGRYCG	2 cut(s)	187, 310
BsiHKCI	CYCGRG	2 cut(s)	206, 560
BsiSI	CCGG	2 cut(s)	57, 163
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	87, 162, 169, 450
BsmAI	GTCTC	2 cut(s)	304, 557
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	8 cut(s)	77, 104, 150, 166, 173, 309, 408, 417
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	2 cut(s)	206, 560
Bsp143I	GATC	4 cut(s)	30, 59, 90, 352
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	8 cut(s)	77, 104, 150, 166, 173, 309, 408, 417
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	3 cut(s)	111, 234, 261
BspLI	GGNNCC	2 cut(s)	61, 600
BspPI	GGATC	3 cut(s)	54, 67, 98
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	6 cut(s)	72, 86, 99, 168, 304, 567
BssMI	GATC	4 cut(s)	30, 59, 90, 352
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	3 cut(s)	86, 168, 567
Bst2BI	CACGAG	1 cut(s)	548
Bst2UI	CCWGG	3 cut(s)	74, 101, 322
Bst4CI	ACNGT	4 cut(s)	13, 22, 139, 479
Bst6I	CTCTTC	3 cut(s)	332, 344, 459
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	164, 180
BstDEI	CTNAG	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	567
BstFNI	CGCG	3 cut(s)	111, 234, 261
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	4 cut(s)	33, 62, 93, 355
BstMAI	GTCTC	2 cut(s)	304, 557
BstMBI	GATC	4 cut(s)	30, 59, 90, 352
BstMCI	CGRYCG	2 cut(s)	187, 310
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 414
BstNI	CCWGG	3 cut(s)	74, 101, 322
BstSCI	CCNGG	3 cut(s)	72, 99, 320
BstUI	CGCG	3 cut(s)	111, 234, 261
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	418, 427
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZI	CGGCCG	1 cut(s)	307
BsuRI	GGCC	8 cut(s)	77, 104, 150, 166, 173, 309, 408, 417
BtgI	CCRYGG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	164, 180
CfoI	GCGC	2 cut(s)	113, 162
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	165, 406
CseI	GACGC	4 cut(s)	223, 230, 250, 412
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	4 cut(s)	32, 61, 92, 354
DpnII	GATC	4 cut(s)	30, 59, 90, 352
EaeI	YGGCCR	2 cut(s)	171, 307
EagI	CGGCCG	1 cut(s)	307
Eam1104I	CTCTTC	3 cut(s)	332, 344, 459
EarI	CTCTTC	3 cut(s)	332, 344, 459
EciI	GGCGGA	2 cut(s)	181, 332
EclXI	CGGCCG	1 cut(s)	307
Eco130I	CCWWGG	3 cut(s)	86, 168, 567
Eco147I	AGGCCT	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	557
Eco52I	CGGCCG	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	206, 560
EcoRII	CCWGG	3 cut(s)	72, 99, 320
EcoT14I	CCWWGG	3 cut(s)	86, 168, 567
ErhI	CCWWGG	3 cut(s)	86, 168, 567
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	1 cut(s)	571
FaiI	YATR	2 cut(s)	475, 569
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	51, 54, 310, 318
Fsp4HI	GCNGC	4 cut(s)	51, 54, 310, 318
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	4 cut(s)	51, 54, 310, 318
GsaI	CCCAGC	2 cut(s)	85, 160
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	8 cut(s)	77, 104, 150, 166, 173, 309, 408, 417
HapII	CCGG	2 cut(s)	57, 163
HgaI	GACGC	4 cut(s)	223, 230, 250, 412
HhaI	GCGC	2 cut(s)	113, 162
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	3 cut(s)	68, 209, 503
HpaII	CCGG	2 cut(s)	57, 163
HphI	GGTGA	3 cut(s)	121, 433, 498
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	3 cut(s)	220, 352, 388
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 265
Hpy99I	CGWCG	7 cut(s)	224, 266, 281, 284, 296, 416, 434
HpyAV	CCTTC	4 cut(s)	115, 124, 205, 223
HpyCH4III	ACNGT	4 cut(s)	13, 22, 139, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 414
HpyF3I	CTNAG	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	2 cut(s)	111, 160
KpnI	GGTACC	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	4 cut(s)	30, 59, 90, 352
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	194, 582
Lsp1109I	GCAGC	1 cut(s)	40
MalI	GATC	4 cut(s)	32, 61, 92, 354
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	30, 59, 90, 352
MboII	GAAGA	6 cut(s)	319, 331, 361, 418, 427, 476
MflI	RGATCY	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	77, 218
MmeI	TCCRAC	2 cut(s)	243, 411
MroNI	GCCGGC	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	57, 163
MspR9I	CCNGG	3 cut(s)	74, 101, 322
MvaI	CCWGG	3 cut(s)	74, 101, 322
MvnI	CGCG	3 cut(s)	111, 234, 261
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 414
NaeI	GCCGGC	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	4 cut(s)	30, 59, 90, 352
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	2 cut(s)	61, 600
NmeAIII	GCCGAG	2 cut(s)	199, 285
PaeR7I	CTCGAG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 288, 420
PdiI	GCCGGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	503
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 55, 311, 319
PleI	GAGTC	2 cut(s)	76, 217
PpsI	GAGTC	2 cut(s)	76, 217
Psp6I	CCWGG	3 cut(s)	72, 99, 320
PspFI	CCCAGC	2 cut(s)	81, 156
PspGI	CCWGG	3 cut(s)	72, 99, 320
PspN4I	GGNNCC	2 cut(s)	61, 600
PspPI	GGNCC	2 cut(s)	165, 406
PspXI	VCTCGAGB	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SalI	GTCGAC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	332
SatI	GCNGC	4 cut(s)	51, 54, 310, 318
Sau3AI	GATC	4 cut(s)	30, 59, 90, 352
Sau96I	GGNCC	2 cut(s)	165, 406
SchI	GAGTC	2 cut(s)	77, 218
ScrFI	CCNGG	3 cut(s)	74, 101, 322
SfiI	GGCCNNNNNGGCC	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	72, 99, 320
StyI	CCWWGG	3 cut(s)	86, 168, 567
TaaI	ACNGT	4 cut(s)	13, 22, 139, 479
TaqI	TCGA	5 cut(s)	66, 198, 207, 264, 528
TauI	GCSGC	3 cut(s)	53, 312, 320
TfiI	GAWTC	1 cut(s)	503
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	106, 462, 530
Tth111I	GACNNNGTC	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.