Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

68153824 .. 68155974

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATAGGTTCAGCCTACAGTCTAATGAATCCCGATCCACCGACAATGTCAACCACCGTCCCACCGTCCTCCCGATCTCCACCACCTTTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCTTGGCCTTCCGTGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCTGCCCCTGGGCCGAGCTTGCCGACCCCTCCGCCTTCGCCAAGCTCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGCCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCGTGGCTCTTCCTCTACCTCTTCCACCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACATCCAAACCTTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGCAAGGGATTGAAGAGATTTCATACTGTGTTTGTAGAGAGCGAGGTTGCGAATCACCTTGGATGAAAGAAGCCATCGACCATCAAAACTCGTTCCTCGTGCTTCAACCTGAGACAGTGGAGAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

208

Amino Acids

23.04

Weight (kDa)

5.93

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	66 - 166	4.2e-20	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	279, 285, 365
AciI	CCGC	8 cut(s)	96, 99, 187, 237, 277, 283, 300, 363
AclWI	GGATC	4 cut(s)	30, 99, 112, 143
AcoI	YGGCCR	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	267
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	132, 495
AgsI	TTSAA	2 cut(s)	509, 602
AjnI	CCWGG	2 cut(s)	117, 212
AluBI	AGCT	3 cut(s)	223, 250, 622
AluI	AGCT	3 cut(s)	223, 250, 622
Alw26I	GTCTC	2 cut(s)	328, 602
AlwI	GGATC	4 cut(s)	30, 99, 112, 143
Ama87I	CYCGRG	1 cut(s)	251
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	8 cut(s)	120, 147, 193, 216, 352, 418, 451, 460
ApeKI	GCWGC	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	216, 451
AsuHPI	GGTGA	4 cut(s)	166, 325, 478, 543
AvaI	CYCGRG	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	593
BbsI	GAAGAC	2 cut(s)	463, 472
BbvCI	CCTCAGC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	116, 578, 585
BceAI	ACGGC	3 cut(s)	208, 287, 305
BciT130I	CCWGG	2 cut(s)	119, 214
BcoDI	GTCTC	2 cut(s)	328, 602
BfaI	CTAG	1 cut(s)	625
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	208
BglI	GCCNNNNNGGC	2 cut(s)	146, 459
BisI	GCNGC	5 cut(s)	96, 99, 208, 300, 363
BlsI	GCNGC	5 cut(s)	97, 100, 209, 301, 364
Bme1390I	CCNGG	2 cut(s)	119, 214
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	216, 451
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	119, 214
BpiI	GAAGAC	2 cut(s)	463, 472
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	7 cut(s)	117, 131, 144, 212, 213, 349, 554
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 495
BseBI	CCWGG	2 cut(s)	119, 214
BseDI	CCNNGG	7 cut(s)	117, 131, 144, 212, 213, 349, 554
BseGI	GGATG	2 cut(s)	435, 564
BseLI	CCNNNNNNNGG	2 cut(s)	132, 495
BseMII	CTCAG	2 cut(s)	478, 597
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	2 cut(s)	126, 201
Bsh1236I	CGCG	3 cut(s)	279, 285, 365
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	8 cut(s)	122, 149, 195, 218, 354, 420, 453, 462
BsiEI	CGRYCG	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	102, 421
BslFI	GGGAC	2 cut(s)	45, 100
BslI	CCNNNNNNNGG	2 cut(s)	132, 495
BsmAI	GTCTC	2 cut(s)	328, 602
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	45, 100
BsnI	GGCC	8 cut(s)	122, 149, 195, 218, 354, 420, 453, 462
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	35, 75, 104, 135, 397
BspACI	CCGC	8 cut(s)	96, 99, 187, 237, 277, 283, 300, 363
BspANI	GGCC	8 cut(s)	122, 149, 195, 218, 354, 420, 453, 462
BspCNI	CTCAG	2 cut(s)	477, 598
BspFNI	CGCG	3 cut(s)	279, 285, 365
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	4 cut(s)	30, 99, 112, 143
BspQI	GCTCTTC	1 cut(s)	377
BssECI	CCNNGG	7 cut(s)	117, 131, 144, 212, 213, 349, 554
BssMI	GATC	5 cut(s)	35, 75, 104, 135, 397
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	144, 554
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	119, 214
Bst4CI	ACNGT	6 cut(s)	21, 59, 67, 184, 524, 613
Bst6I	CTCTTC	4 cut(s)	335, 377, 389, 504
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	464, 606
BstF5I	GGATG	2 cut(s)	435, 564
BstFNI	CGCG	3 cut(s)	279, 285, 365
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	5 cut(s)	38, 78, 107, 138, 400
BstMAI	GTCTC	2 cut(s)	328, 602
BstMBI	GATC	5 cut(s)	35, 75, 104, 135, 397
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 155, 224, 305, 459
BstNI	CCWGG	2 cut(s)	119, 214
BstSCI	CCNGG	2 cut(s)	117, 212
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	3 cut(s)	279, 285, 365
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	2 cut(s)	463, 472
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	8 cut(s)	122, 149, 195, 218, 354, 420, 453, 462
BtsCI	GGATG	2 cut(s)	435, 564
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	216, 451
CseI	GACGC	4 cut(s)	268, 274, 275, 457
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
DdeI	CTNAG	2 cut(s)	464, 606
DpnI	GATC	5 cut(s)	37, 77, 106, 137, 399
DpnII	GATC	5 cut(s)	35, 75, 104, 135, 397
EaeI	YGGCCR	1 cut(s)	418
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	4 cut(s)	335, 377, 389, 504
EarI	CTCTTC	4 cut(s)	335, 377, 389, 504
EciI	GGCGGA	1 cut(s)	226
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	144, 554
Eco147I	AGGCCT	1 cut(s)	122
Eco47III	AGCGCT	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	117, 212
EcoT14I	CCWWGG	2 cut(s)	144, 554
ErhI	CCWWGG	2 cut(s)	144, 554
Esp3I	CGTCTC	1 cut(s)	328
FaiI	YATR	1 cut(s)	520
FaqI	GGGAC	2 cut(s)	45, 100
Fnu4HI	GCNGC	5 cut(s)	96, 99, 208, 300, 363
FokI	GGATG	2 cut(s)	422, 571
Fsp4HI	GCNGC	5 cut(s)	96, 99, 208, 300, 363
FspBI	CTAG	1 cut(s)	625
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	5 cut(s)	96, 99, 208, 300, 363
GsaI	CCCAGC	2 cut(s)	130, 205
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	8 cut(s)	122, 149, 195, 218, 354, 420, 453, 462
HapII	CCGG	2 cut(s)	102, 421
HgaI	GACGC	4 cut(s)	268, 274, 275, 457
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	2 cut(s)	52, 289
HindII	GTYRAC	2 cut(s)	52, 289
HinfI	GANTC	4 cut(s)	29, 113, 254, 548
HpaII	CCGG	2 cut(s)	102, 421
HphI	GGTGA	4 cut(s)	166, 325, 478, 543
Hpy166II	GTNNAC	2 cut(s)	52, 289
Hpy188I	TCNGA	4 cut(s)	135, 265, 397, 433
Hpy188III	TCNNGA	2 cut(s)	33, 73
Hpy8I	GTNNAC	2 cut(s)	52, 289
Hpy99I	CGWCG	6 cut(s)	269, 308, 320, 461, 479, 497
HpyAV	CCTTC	5 cut(s)	160, 169, 250, 268, 352
HpyCH4III	ACNGT	6 cut(s)	21, 59, 67, 184, 524, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 155, 224, 305, 459
HpyF3I	CTNAG	2 cut(s)	464, 606
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	35, 75, 104, 135, 397
LguI	GCTCTTC	1 cut(s)	377
LpnPI	CCDG	9 cut(s)	104, 115, 131, 140, 199, 215, 226, 434, 618
Lsp1109I	GCAGC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	625
MalI	GATC	5 cut(s)	37, 77, 106, 137, 399
MboI	GATC	5 cut(s)	35, 75, 104, 135, 397
MboII	GAAGA	7 cut(s)	322, 364, 376, 406, 463, 472, 521
MflI	RGATCY	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	122, 263
MmeI	TCCRAC	2 cut(s)	288, 456
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	446
MspI	CCGG	2 cut(s)	102, 421
MspR9I	CCNGG	2 cut(s)	119, 214
MvaI	CCWGG	2 cut(s)	119, 214
MvnI	CGCG	3 cut(s)	279, 285, 365
MwoI	GCNNNNNNNGC	5 cut(s)	146, 155, 224, 305, 459
NdeII	GATC	5 cut(s)	35, 75, 104, 135, 397
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	2 cut(s)	244, 330
PaeR7I	CTCGAG	1 cut(s)	251
PasI	CCCWGGG	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 312, 465
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	29, 548
PflFI	GACNNNGTC	2 cut(s)	47, 182
PkrI	GCNGC	5 cut(s)	97, 100, 209, 301, 364
PleI	GAGTC	2 cut(s)	121, 262
PpsI	GAGTC	2 cut(s)	121, 262
Psp6I	CCWGG	2 cut(s)	117, 212
PspFI	CCCAGC	2 cut(s)	126, 201
PspGI	CCWGG	2 cut(s)	117, 212
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	216, 451
PspXI	VCTCGAGB	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	2 cut(s)	47, 182
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	5 cut(s)	96, 99, 208, 300, 363
Sau3AI	GATC	5 cut(s)	35, 75, 104, 135, 397
Sau96I	GGNCC	2 cut(s)	216, 451
SchI	GAGTC	2 cut(s)	122, 263
ScrFI	CCNGG	2 cut(s)	119, 214
SfcI	CTRYAG	1 cut(s)	17
SfiI	GGCCNNNNNGGCC	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	8 cut(s)	96, 99, 187, 237, 277, 283, 300, 363
SspMI	CTAG	1 cut(s)	625
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	117, 212
StyI	CCWWGG	2 cut(s)	144, 554
TaaI	ACNGT	6 cut(s)	21, 59, 67, 184, 524, 613
TaqI	TCGA	3 cut(s)	111, 252, 573
TauI	GCSGC	4 cut(s)	98, 101, 302, 365
TfiI	GAWTC	2 cut(s)	29, 548
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	618
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	5 cut(s)	17, 42, 151, 507, 575
TspGWI	ACGGA	2 cut(s)	143, 481
TspRI	CASTG	1 cut(s)	618
Tth111I	GACNNNGTC	2 cut(s)	47, 182
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.