Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033441.1

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

277 .. 569

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

tctccaccacctctgtcgccgccgcaggatccatcgagtcccaggcctcccagcctcggatctccaccctggccttccgcgctttcatcaaccacatcaccgacaccgtccgcaacggcctctcccaacgcctcccctgggccgagcttgcctaccgctccgccttcgccaagcctaagtccttctccgacgccaccctccgcgtccgcgtcaactacctcgccatcgtcgccctcatcgtcaccgtctccctcttcacccaccccttctccattggcctcctcgccgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

10.87

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	3 cut(s)	80, 203, 209
AciI	CCGC	9 cut(s)	20, 23, 78, 111, 156, 161, 201, 207, 287
AclWI	GGATC	3 cut(s)	23, 36, 67
AcyI	GRCGYC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	56, 138
AjnI	CCWGG	3 cut(s)	41, 68, 136
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	23, 36, 67
AoxI	GGCC	5 cut(s)	44, 71, 117, 140, 276
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	90, 234, 249
BamHI	GGATCC	1 cut(s)	28
BccI	CCATC	2 cut(s)	40, 232
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	43, 70, 138
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	20, 23, 287
BlsI	GCNGC	3 cut(s)	21, 24, 288
Bme1390I	CCNGG	3 cut(s)	43, 70, 138
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	43, 70, 138
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	5 cut(s)	41, 55, 68, 136, 137
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 138
BseBI	CCWGG	3 cut(s)	43, 70, 138
BseDI	CCNNGG	5 cut(s)	41, 55, 68, 136, 137
BseLI	CCNNNNNNNGG	2 cut(s)	56, 138
BseRI	GAGGAG	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	3 cut(s)	80, 203, 209
BshFI	GGCC	5 cut(s)	46, 73, 119, 142, 278
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	56, 138
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	46, 73, 119, 142, 278
Bsp143I	GATC	2 cut(s)	28, 59
BspACI	CCGC	9 cut(s)	20, 23, 78, 111, 156, 161, 201, 207, 287
BspANI	GGCC	5 cut(s)	46, 73, 119, 142, 278
BspFNI	CGCG	3 cut(s)	80, 203, 209
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	23, 36, 67
BsrBI	CCGCTC	1 cut(s)	158
BssECI	CCNNGG	5 cut(s)	41, 55, 68, 136, 137
BssMI	GATC	2 cut(s)	28, 59
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	3 cut(s)	43, 70, 138
Bst4CI	ACNGT	2 cut(s)	108, 246
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	176
BstFNI	CGCG	3 cut(s)	80, 203, 209
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	31, 62
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	28, 59
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 148, 229
BstNI	CCWGG	3 cut(s)	43, 70, 138
BstSCI	CCNGG	3 cut(s)	41, 68, 136
BstUI	CGCG	3 cut(s)	80, 203, 209
BstX2I	RGATCY	2 cut(s)	28, 59
BstYI	RGATCY	2 cut(s)	28, 59
BsuRI	GGCC	5 cut(s)	46, 73, 119, 142, 278
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	3 cut(s)	192, 198, 199
CviJI	RGCY	8 cut(s)	46, 54, 73, 119, 142, 147, 174, 278
CviKI_1	RGCY	8 cut(s)	46, 54, 73, 119, 142, 147, 174, 278
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	30, 61
DpnII	GATC	2 cut(s)	28, 59
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	41, 68, 136
Esp3I	CGTCTC	1 cut(s)	252
FaqI	GGGAC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	20, 23, 287
Fsp4HI	GCNGC	3 cut(s)	20, 23, 287
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	20, 23, 287
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	5 cut(s)	46, 73, 119, 142, 278
HgaI	GACGC	3 cut(s)	192, 198, 199
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	3 cut(s)	90, 234, 249
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	59, 189
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	193, 232
HpyAV	CCTTC	4 cut(s)	84, 174, 192, 276
HpyCH4III	ACNGT	2 cut(s)	108, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 148, 229
HpyF3I	CTNAG	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	191
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	28, 59
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	11, 28, 55, 55, 64, 82, 123, 150
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	2 cut(s)	30, 61
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	2 cut(s)	28, 59
MboII	GAAGA	1 cut(s)	246
MflI	RGATCY	2 cut(s)	28, 59
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	43, 70, 138
MvaI	CCWGG	3 cut(s)	43, 70, 138
MvnI	CGCG	3 cut(s)	80, 203, 209
MwoI	GCNNNNNNNGC	3 cut(s)	79, 148, 229
NdeII	GATC	2 cut(s)	28, 59
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	240
PasI	CCCWGGG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	21, 24, 288
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	41, 68, 136
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	3 cut(s)	41, 68, 136
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	28, 59
PsyI	GACNNNGTC	1 cut(s)	106
SatI	GCNGC	3 cut(s)	20, 23, 287
Sau3AI	GATC	2 cut(s)	28, 59
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	43, 70, 138
SetI	ASST	3 cut(s)	13, 149, 221
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	9 cut(s)	20, 23, 78, 111, 156, 161, 201, 207, 287
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	3 cut(s)	41, 68, 136
TaaI	ACNGT	2 cut(s)	108, 246
TaqI	TCGA	1 cut(s)	35
TauI	GCSGC	3 cut(s)	22, 25, 289
TseFI	GTSAC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	75
Tth111I	GACNNNGTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.