Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

41244020 .. 41244822

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGTCAACCACCGTCCCACCCGTCCTCCCAATCTCCACCACCTCTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCGGCAATTGCCTCTCGCAGCGCCGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

56

Amino Acids

5.88

Weight (kDa)

10.19

Isoelectric Point (pI)

73.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	51, 54, 109, 163
AclWI	GGATC	3 cut(s)	54, 67, 98
AfiI	CCNNNNNNNGG	1 cut(s)	87
AjnI	CCWGG	2 cut(s)	72, 99
AlwI	GGATC	3 cut(s)	54, 67, 98
AoxI	GGCC	2 cut(s)	75, 102
ApeKI	GCWGC	1 cut(s)	157
AspLEI	GCGC	2 cut(s)	113, 162
AsuHPI	GGTGA	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	59
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	74, 101
BfaI	CTAG	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	4 cut(s)	51, 54, 158, 163
BlsI	GCNGC	4 cut(s)	52, 55, 159, 164
Bme1390I	CCNGG	2 cut(s)	74, 101
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	74, 101
BsaJI	CCNNGG	3 cut(s)	72, 86, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	74, 101
BseDI	CCNNGG	3 cut(s)	72, 86, 99
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	77, 104
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	77, 104
Bsp143I	GATC	2 cut(s)	59, 90
BspACI	CCGC	4 cut(s)	51, 54, 109, 163
BspANI	GGCC	2 cut(s)	77, 104
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	54, 67, 98
BssECI	CCNNGG	3 cut(s)	72, 86, 99
BssMI	GATC	2 cut(s)	59, 90
Bst2UI	CCWGG	2 cut(s)	74, 101
Bst4CI	ACNGT	2 cut(s)	13, 139
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	2 cut(s)	62, 93
BstMBI	GATC	2 cut(s)	59, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 110
BstNI	CCWGG	2 cut(s)	74, 101
BstSCI	CCNGG	2 cut(s)	72, 99
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	77, 104
CfoI	GCGC	2 cut(s)	113, 162
CviJI	RGCY	3 cut(s)	77, 85, 104
CviKI_1	RGCY	3 cut(s)	77, 85, 104
DpnI	GATC	2 cut(s)	61, 92
DpnII	GATC	2 cut(s)	59, 90
Eco147I	AGGCCT	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	72, 99
FaqI	GGGAC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	51, 54, 158, 163
Fsp4HI	GCNGC	4 cut(s)	51, 54, 158, 163
FspBI	CTAG	1 cut(s)	169
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	4 cut(s)	51, 54, 158, 163
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	77, 104
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	113, 162
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	115, 124
HpyCH4III	ACNGT	2 cut(s)	13, 139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 110
HspAI	GCGC	2 cut(s)	111, 160
Kzo9I	GATC	2 cut(s)	59, 90
LpnPI	CCDG	6 cut(s)	59, 70, 86, 86, 95, 113
MaeI	CTAG	1 cut(s)	169
MalI	GATC	2 cut(s)	61, 92
MboI	GATC	2 cut(s)	59, 90
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	5 cut(s)	35, 52, 88, 96, 161
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	74, 101
MunI	CAATTG	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	74, 101
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	101, 110
NdeII	GATC	2 cut(s)	59, 90
NlaIV	GGNNCC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 55, 159, 164
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	72, 99
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	72, 99
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	137
SatI	GCNGC	4 cut(s)	51, 54, 158, 163
Sau3AI	GATC	2 cut(s)	59, 90
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	74, 101
SetI	ASST	1 cut(s)	44
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	51, 54, 109, 163
SspMI	CTAG	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	72, 99
TaaI	ACNGT	2 cut(s)	13, 139
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	145
TauI	GCSGC	3 cut(s)	53, 56, 165
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.