Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

26440639 .. 26441658

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAACCCAACCCCACCTCCGATCCTTCCGGTCTCAACCACGTCCACAACCACCGCCGGCTCCGTCCAATCCCAGGCCCCGATCGCCACCCCAGCCTTCCGCGCCTTCATCACCCACATCTCGGAAAATCTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGACCGAGCTCTTCGACCGCTCCGCCTTCGCCAAGCCCGAGTCGCTCTCCGAAGCCACCGGTCGCGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCACCATCGCTCTCATCGTCGCCGTCTCCCTCTTCACCCACCCATTCTCTCTCCTCGTCCTCCTCGGTCTCCTCGCCGGCTGGCTCTTCCTCTACCTCTTCCGGCCCTCCGATCAGCCCCTCGTCATCTTCGGCCGCACCTTCTCCGACACCCAGACCCTCTGGGGCCTCATCGCCTTCTCCATCTTCGTCGTCTTCCTCACCTCCGTCGGATCCCTACTCATCTCGGCTCTACTCGTCGGCGCTGCCGTCGTCTTCGCTCACGGCGCCTTTAGGGTTCCCGAGGACCTCTTCTTGGACGAGCAAGAGCCTACAGCCTCCACTGGCTTCCTCTCCTTCCTCAACGGCGCTGCCTCTAATGTCGCTGCCGCCACAGCCCCGGCCGTTATCGCCGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

224

Amino Acids

23.98

Weight (kDa)

9.29

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccBSI	CCGCTC	2 cut(s)	183, 662
AccII	CGCG	4 cut(s)	105, 228, 255, 666
AclWI	GGATC	3 cut(s)	19, 474, 487
AcoI	YGGCCR	2 cut(s)	400, 648
AcyI	GRCGYC	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	76, 124, 562
AgeI	ACCGGT	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	75, 161
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	3 cut(s)	40, 298, 341
AlwI	GGATC	3 cut(s)	19, 474, 487
Ama87I	CYCGRG	2 cut(s)	200, 548
AoxI	GGCC	6 cut(s)	78, 142, 371, 400, 433, 648
ApeKI	GCWGC	3 cut(s)	512, 617, 632
AsiGI	ACCGGT	1 cut(s)	221
AspLEI	GCGC	5 cut(s)	107, 156, 512, 536, 617
AspS9I	GGNCC	5 cut(s)	79, 165, 372, 433, 553
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	3 cut(s)	106, 295, 460
AvaI	CYCGRG	2 cut(s)	200, 548
AvaII	GGWCC	2 cut(s)	165, 553
BamHI	GGATCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	454, 514
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	499, 604, 619
BccI	CCATC	2 cut(s)	281, 458
BceAI	ACGGC	6 cut(s)	157, 275, 500, 547, 628, 635
BciT130I	CCWGG	2 cut(s)	77, 163
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	40, 298, 341
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	4 cut(s)	157, 513, 537, 618
BisI	GCNGC	7 cut(s)	157, 403, 513, 618, 633, 636, 660
BlsI	GCNGC	7 cut(s)	158, 404, 514, 619, 634, 637, 661
Bme1390I	CCNGG	3 cut(s)	77, 163, 647
Bme18I	GGWCC	2 cut(s)	165, 553
BmeT110I	CYCGRG	2 cut(s)	200, 548
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	5 cut(s)	79, 165, 372, 433, 553
BmiI	GGNNCC	6 cut(s)	64, 81, 434, 481, 535, 546
BmrFI	CCNGG	3 cut(s)	77, 163, 647
BpiI	GAAGAC	2 cut(s)	454, 514
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuMI	CCSGG	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	534
BsaI	GGTCTC	2 cut(s)	40, 341
BsaJI	CCNNGG	5 cut(s)	75, 161, 331, 549, 645
BsaWI	WCCGGW	2 cut(s)	31, 221
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 124, 562
Bse118I	RCCGGY	3 cut(s)	59, 221, 344
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	77, 163
BseDI	CCNNGG	5 cut(s)	75, 161, 331, 549, 645
BseLI	CCNNNNNNNGG	3 cut(s)	76, 124, 562
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	3 cut(s)	311, 320, 329
BseX3I	CGGCCG	2 cut(s)	400, 648
BseXI	GCAGC	3 cut(s)	499, 604, 619
BseYI	CCCAGC	2 cut(s)	94, 150
Bsh1236I	CGCG	4 cut(s)	105, 228, 255, 666
Bsh1285I	CGRYCG	5 cut(s)	87, 181, 226, 403, 651
BshFI	GGCC	6 cut(s)	80, 144, 373, 402, 435, 650
BshNI	GGYRCC	1 cut(s)	533
BshTI	ACCGGT	1 cut(s)	221
BsiEI	CGRYCG	5 cut(s)	87, 181, 226, 403, 651
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	2 cut(s)	200, 548
BsiSI	CCGG	6 cut(s)	32, 60, 222, 345, 370, 647
BslI	CCNNNNNNNGG	3 cut(s)	76, 124, 562
BsmAI	GTCTC	3 cut(s)	40, 298, 341
BsmBI	CGTCTC	1 cut(s)	298
BsnI	GGCC	6 cut(s)	80, 144, 373, 402, 435, 650
Bso31I	GGTCTC	2 cut(s)	40, 341
BsoBI	CYCGRG	2 cut(s)	200, 548
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	24, 84, 379, 479
BspANI	GGCC	6 cut(s)	80, 144, 373, 402, 435, 650
BspFNI	CGCG	4 cut(s)	105, 228, 255, 666
BspLI	GGNNCC	6 cut(s)	64, 81, 434, 481, 535, 546
BspPI	GGATC	3 cut(s)	19, 474, 487
BspQI	GCTCTTC	2 cut(s)	179, 359
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	40, 341
BsrBI	CCGCTC	2 cut(s)	183, 662
BsrFI	RCCGGY	3 cut(s)	59, 221, 344
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	3 cut(s)	59, 221, 344
BssECI	CCNNGG	5 cut(s)	75, 161, 331, 549, 645
BssMI	GATC	4 cut(s)	24, 84, 379, 479
BssNI	GRCGYC	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	77, 163
Bst6I	CTCTTC	5 cut(s)	179, 305, 359, 371, 563
BstACI	GRCGYC	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	61, 346, 350, 664
BstFNI	CGCG	4 cut(s)	105, 228, 255, 666
BstH2I	RGCGCY	4 cut(s)	157, 513, 537, 618
BstHHI	GCGC	5 cut(s)	107, 156, 512, 536, 617
BstKTI	GATC	4 cut(s)	27, 87, 382, 482
BstMAI	GTCTC	3 cut(s)	40, 298, 341
BstMBI	GATC	4 cut(s)	24, 84, 379, 479
BstMCI	CGRYCG	5 cut(s)	87, 181, 226, 403, 651
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 95, 104, 205, 275, 533, 641, 656
BstNI	CCWGG	2 cut(s)	77, 163
BstSCI	CCNGG	3 cut(s)	75, 161, 645
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	4 cut(s)	105, 228, 255, 666
BstV1I	GCAGC	3 cut(s)	499, 604, 619
BstV2I	GAAGAC	2 cut(s)	454, 514
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BstZI	CGGCCG	2 cut(s)	400, 648
BsuRI	GGCC	6 cut(s)	80, 144, 373, 402, 435, 650
BtgZI	GCGATG	2 cut(s)	259, 424
BtrI	CACGTC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	4 cut(s)	61, 346, 350, 664
CfoI	GCGC	5 cut(s)	107, 156, 512, 536, 617
Cfr10I	RCCGGY	3 cut(s)	59, 221, 344
Cfr13I	GGNCC	5 cut(s)	79, 165, 372, 433, 553
CseI	GACGC	2 cut(s)	217, 244
CspAI	ACCGGT	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	535
DpnI	GATC	4 cut(s)	26, 86, 381, 481
DpnII	GATC	4 cut(s)	24, 84, 379, 479
EaeI	YGGCCR	2 cut(s)	400, 648
EagI	CGGCCG	2 cut(s)	400, 648
Eam1104I	CTCTTC	5 cut(s)	179, 305, 359, 371, 563
EarI	CTCTTC	5 cut(s)	179, 305, 359, 371, 563
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	172
EclXI	CGGCCG	2 cut(s)	400, 648
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	40, 341
Eco47I	GGWCC	2 cut(s)	165, 553
Eco52I	CGGCCG	2 cut(s)	400, 648
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	2 cut(s)	200, 548
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	3 cut(s)	79, 433, 553
EcoRII	CCWGG	2 cut(s)	75, 161
EcoT38I	GRGCYC	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	535
EheI	GGCGCC	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	298
Fnu4HI	GCNGC	7 cut(s)	157, 403, 513, 618, 633, 636, 660
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	7 cut(s)	157, 403, 513, 618, 633, 636, 660
GlaI	GCGC	5 cut(s)	106, 155, 511, 535, 616
GluI	GCNGC	7 cut(s)	157, 403, 513, 618, 633, 636, 660
GsaI	CCCAGC	2 cut(s)	98, 154
HaeII	RGCGCY	4 cut(s)	157, 513, 537, 618
HaeIII	GGCC	6 cut(s)	80, 144, 373, 402, 435, 650
HapII	CCGG	6 cut(s)	32, 60, 222, 345, 370, 647
HgaI	GACGC	2 cut(s)	217, 244
HhaI	GCGC	5 cut(s)	107, 156, 512, 536, 617
Hin1I	GRCGYC	1 cut(s)	534
Hin6I	GCGC	5 cut(s)	105, 154, 510, 534, 615
HinP1I	GCGC	5 cut(s)	105, 154, 510, 534, 615
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	6 cut(s)	32, 60, 222, 345, 370, 647
HphI	GGTGA	3 cut(s)	106, 295, 460
Hpy166II	GTNNAC	2 cut(s)	48, 259
Hpy188I	TCNGA	6 cut(s)	24, 127, 214, 379, 415, 479
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	48, 259
Hpy99I	CGWCG	5 cut(s)	290, 461, 479, 509, 521
HpyAV	CCTTC	7 cut(s)	38, 109, 118, 199, 418, 454, 613
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 95, 104, 205, 275, 533, 641, 656
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	534
HspAI	GCGC	5 cut(s)	105, 154, 510, 534, 615
KasI	GGCGCC	1 cut(s)	533
KroI	GCCGGC	2 cut(s)	59, 344
KroNI	GCCGGC	2 cut(s)	61, 346
Kzo9I	GATC	4 cut(s)	24, 84, 379, 479
LguI	GCTCTTC	2 cut(s)	179, 359
LmnI	GCTCC	2 cut(s)	68, 188
Lsp1109I	GCAGC	3 cut(s)	499, 604, 619
MaeII	ACGT	1 cut(s)	44
MalI	GATC	4 cut(s)	26, 86, 381, 481
MbiI	CCGCTC	2 cut(s)	183, 662
MboI	GATC	4 cut(s)	24, 84, 379, 479
MboII	GAAGA	9 cut(s)	166, 292, 346, 358, 388, 445, 454, 514, 550
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	174
Mly113I	GGCGCC	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	438, 457
MroNI	GCCGGC	2 cut(s)	59, 344
MspI	CCGG	6 cut(s)	32, 60, 222, 345, 370, 647
MspR9I	CCNGG	3 cut(s)	77, 163, 647
MvaI	CCWGG	2 cut(s)	77, 163
MvnI	CGCG	4 cut(s)	105, 228, 255, 666
MwoI	GCNNNNNNNGC	8 cut(s)	86, 95, 104, 205, 275, 533, 641, 656
NaeI	GCCGGC	2 cut(s)	61, 346
NarI	GGCGCC	1 cut(s)	534
NciI	CCSGG	1 cut(s)	647
NdeII	GATC	4 cut(s)	24, 84, 379, 479
NgoMIV	GCCGGC	2 cut(s)	59, 344
NlaIV	GGNNCC	6 cut(s)	64, 81, 434, 481, 535, 546
NmeAIII	GCCGAG	1 cut(s)	473
PciSI	GCTCTTC	2 cut(s)	179, 359
PcsI	WCGNNNNNNNCGW	3 cut(s)	198, 282, 513
PdiI	GCCGGC	2 cut(s)	61, 346
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	7 cut(s)	158, 404, 514, 619, 634, 637, 661
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	553
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	75, 161
PspFI	CCCAGC	2 cut(s)	94, 150
PspGI	CCWGG	2 cut(s)	75, 161
PspN4I	GGNNCC	6 cut(s)	64, 81, 434, 481, 535, 546
PspPI	GGNCC	5 cut(s)	79, 165, 372, 433, 553
PspPPI	RGGWCCY	1 cut(s)	553
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	174
SapI	GCTCTTC	2 cut(s)	179, 359
SatI	GCNGC	7 cut(s)	157, 403, 513, 618, 633, 636, 660
Sau3AI	GATC	4 cut(s)	24, 84, 379, 479
Sau96I	GGNCC	5 cut(s)	79, 165, 372, 433, 553
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	77, 163, 647
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	22, 47, 174, 267, 366, 410, 473, 558
SfcI	CTRYAG	1 cut(s)	579
SfoI	GGCGCC	1 cut(s)	535
SinI	GGWCC	2 cut(s)	165, 553
SspDI	GGCGCC	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	75, 161, 645
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	5, 177
TaqII	GACCGA	2 cut(s)	182, 323
TauI	GCSGC	4 cut(s)	159, 405, 638, 662
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	3 cut(s)	512, 617, 632
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	2 cut(s)	55, 463
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	165, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.