Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

37946755 .. 37948699

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG189600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACCACCCATACTTTTTTCTCTCAGACTCTTATCTCTTTCTCTTCTTCTGGAAAAATAAACCATCTCTCTCTCTCCCTCTCTTTCTCGTCTTACTGCGTCTATTTCCATCGACCTTCCTCCGATTCTTCAATCACAAATTCCCTTATAAACCCAAAAAGCTCTCCCCAGATCTTCACAAAAATACTTGATACAATTTCAGATCCCGATCCACCGACAATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTGTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGTGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGTTCTTCCTCTACTTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGCAAGGGATTGAAGAGATTTCATACTGTGTTTGTAGAGAGCGAGGTTGCGAATCACCTCGGATGAAAGAAGCCATCGACCATCAAAACTCGTTCCTCGTGCTTCAACCCGAGACCATGGAGAAGCTCCAGCAACAACACAATCAGGTACCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

282

Amino Acids

31.44

Weight (kDa)

8.29

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	123 - 231	1.6e-35	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	838
AccB1I	GGYRCC	1 cut(s)	838
AccBSI	CCGCTC	1 cut(s)	408
AccII	CGCG	2 cut(s)	330, 480
AclWI	GGATC	5 cut(s)	197, 203, 273, 286, 317
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	3 cut(s)	306, 388, 690
AgsI	TTSAA	3 cut(s)	132, 704, 797
AjnI	CCWGG	4 cut(s)	291, 318, 386, 560
AluBI	AGCT	3 cut(s)	162, 397, 817
AluI	AGCT	3 cut(s)	162, 397, 817
Alw26I	GTCTC	2 cut(s)	523, 797
AlwI	GGATC	5 cut(s)	197, 203, 273, 286, 317
Ama87I	CYCGRG	2 cut(s)	425, 800
AoxI	GGCC	8 cut(s)	294, 321, 367, 390, 547, 613, 646, 655
ApoI	RAATTY	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	838
AspLEI	GCGC	2 cut(s)	332, 381
AspS9I	GGNCC	2 cut(s)	390, 646
AsuHPI	GGTGA	4 cut(s)	340, 520, 673, 738
AvaI	CYCGRG	2 cut(s)	425, 800
BamHI	GGATCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	838
BauI	CACGAG	1 cut(s)	788
BbsI	GAAGAC	2 cut(s)	658, 667
BbvCI	CCTCAGC	1 cut(s)	659
BccI	CCATC	5 cut(s)	72, 117, 290, 773, 780
BceAI	ACGGC	3 cut(s)	382, 479, 500
BciT130I	CCWGG	4 cut(s)	293, 320, 388, 562
BcoDI	GTCTC	2 cut(s)	523, 797
BfoI	RGCGCY	1 cut(s)	382
BglI	GCCNNNNNGGC	2 cut(s)	320, 654
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	4 cut(s)	270, 273, 382, 558
BlsI	GCNGC	4 cut(s)	271, 274, 383, 559
Bme1390I	CCNGG	4 cut(s)	293, 320, 388, 562
BmeT110I	CYCGRG	2 cut(s)	425, 800
BmgT120I	GGNCC	2 cut(s)	390, 646
BmiI	GGNNCC	2 cut(s)	280, 840
BmrFI	CCNGG	4 cut(s)	293, 320, 388, 562
BpiI	GAAGAC	2 cut(s)	658, 667
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	8 cut(s)	291, 305, 318, 386, 387, 544, 749, 807
BsaXI	ACNNNNNCTCC	6 cut(s)	228, 258, 356, 386, 524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 388, 690
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	4 cut(s)	293, 320, 388, 562
BseDI	CCNNGG	8 cut(s)	291, 305, 318, 386, 387, 544, 749, 807
BseGI	GGATG	1 cut(s)	759
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	306, 388, 690
BseMII	CTCAG	2 cut(s)	38, 673
BseRI	GAGGAG	1 cut(s)	542
BseX3I	CGGCCG	1 cut(s)	613
BseYI	CCCAGC	2 cut(s)	300, 375
Bsh1236I	CGCG	2 cut(s)	330, 480
Bsh1285I	CGRYCG	2 cut(s)	406, 616
BshFI	GGCC	8 cut(s)	296, 323, 369, 392, 549, 615, 648, 657
BshNI	GGYRCC	1 cut(s)	838
BsiEI	CGRYCG	2 cut(s)	406, 616
BsiHKCI	CYCGRG	2 cut(s)	425, 800
BsiSI	CCGG	2 cut(s)	276, 616
BslFI	GGGAC	2 cut(s)	218, 274
BslI	CCNNNNNNNGG	3 cut(s)	306, 388, 690
BsmAI	GTCTC	2 cut(s)	523, 797
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	218, 274
BsnI	GGCC	8 cut(s)	296, 323, 369, 392, 549, 615, 648, 657
Bso31I	GGTCTC	1 cut(s)	797
BsoBI	CYCGRG	2 cut(s)	425, 800
Bsp143I	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
Bsp19I	CCATGG	1 cut(s)	807
BspANI	GGCC	8 cut(s)	296, 323, 369, 392, 549, 615, 648, 657
BspCNI	CTCAG	2 cut(s)	37, 672
BspFNI	CGCG	2 cut(s)	330, 480
BspLI	GGNNCC	2 cut(s)	280, 840
BspPI	GGATC	5 cut(s)	197, 203, 273, 286, 317
BspT107I	GGYRCC	1 cut(s)	838
BspTNI	GGTCTC	1 cut(s)	797
BsrBI	CCGCTC	1 cut(s)	408
BssECI	CCNNGG	8 cut(s)	291, 305, 318, 386, 387, 544, 749, 807
BssMI	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	4 cut(s)	293, 320, 388, 562
Bst4CI	ACNGT	3 cut(s)	232, 358, 719
Bst6I	CTCTTC	3 cut(s)	49, 530, 699
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	24, 659
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	759
BstFNI	CGCG	2 cut(s)	330, 480
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	332, 381
BstKTI	GATC	7 cut(s)	174, 205, 211, 252, 281, 312, 595
BstMAI	GTCTC	2 cut(s)	523, 797
BstMBI	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
BstMCI	CGRYCG	2 cut(s)	406, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 329, 398, 500, 654
BstNI	CCWGG	4 cut(s)	293, 320, 388, 562
BstSCI	CCNGG	4 cut(s)	291, 318, 386, 560
BstUI	CGCG	2 cut(s)	330, 480
BstV2I	GAAGAC	2 cut(s)	658, 667
BstX2I	RGATCY	3 cut(s)	171, 202, 278
BstYI	RGATCY	3 cut(s)	171, 202, 278
BstZI	CGGCCG	1 cut(s)	613
BsuRI	GGCC	8 cut(s)	296, 323, 369, 392, 549, 615, 648, 657
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	1 cut(s)	759
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	2 cut(s)	332, 381
Cfr13I	GGNCC	2 cut(s)	390, 646
CseI	GACGC	4 cut(s)	88, 449, 469, 652
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	1 cut(s)	808
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	2 cut(s)	24, 659
DpnI	GATC	7 cut(s)	173, 204, 210, 251, 280, 311, 594
DpnII	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
EaeI	YGGCCR	1 cut(s)	613
EagI	CGGCCG	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	49, 530, 699
EarI	CTCTTC	3 cut(s)	49, 530, 699
EciI	GGCGGA	2 cut(s)	400, 572
EclXI	CGGCCG	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	797
Eco52I	CGGCCG	1 cut(s)	613
Eco88I	CYCGRG	2 cut(s)	425, 800
EcoRII	CCWGG	4 cut(s)	291, 318, 386, 560
EcoT14I	CCWWGG	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	1 cut(s)	811
FaiI	YATR	4 cut(s)	12, 149, 715, 809
FaqI	GGGAC	2 cut(s)	218, 274
FatI	CATG	1 cut(s)	807
Fnu4HI	GCNGC	4 cut(s)	270, 273, 382, 558
FokI	GGATG	1 cut(s)	766
Fsp4HI	GCNGC	4 cut(s)	270, 273, 382, 558
GlaI	GCGC	2 cut(s)	331, 380
GluI	GCNGC	4 cut(s)	270, 273, 382, 558
GsaI	CCCAGC	2 cut(s)	304, 379
GsuI	CTGGAG	1 cut(s)	803
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	8 cut(s)	296, 323, 369, 392, 549, 615, 648, 657
HapII	CCGG	2 cut(s)	276, 616
HgaI	GACGC	4 cut(s)	88, 449, 469, 652
HhaI	GCGC	2 cut(s)	332, 381
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	811
Hin6I	GCGC	2 cut(s)	330, 379
HinP1I	GCGC	2 cut(s)	330, 379
HincII	GTYRAC	2 cut(s)	225, 484
HindII	GTYRAC	2 cut(s)	225, 484
HinfI	GANTC	5 cut(s)	28, 125, 287, 428, 743
HpaII	CCGG	2 cut(s)	276, 616
HphI	GGTGA	4 cut(s)	340, 520, 673, 738
Hpy166II	GTNNAC	2 cut(s)	225, 484
Hpy188I	TCNGA	8 cut(s)	27, 124, 202, 309, 439, 592, 628, 753
Hpy188III	TCNNGA	3 cut(s)	51, 206, 247
Hpy8I	GTNNAC	2 cut(s)	225, 484
Hpy99I	CGWCG	7 cut(s)	443, 500, 503, 515, 656, 674, 692
HpyAV	CCTTC	6 cut(s)	126, 334, 343, 424, 442, 547
HpyCH4III	ACNGT	3 cut(s)	232, 358, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 329, 398, 500, 654
HpyF3I	CTNAG	2 cut(s)	24, 659
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	811
HspAI	GCGC	2 cut(s)	330, 379
KpnI	GGTACC	1 cut(s)	842
Kzo9I	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
LmnI	GCTCC	2 cut(s)	413, 822
MalI	GATC	7 cut(s)	173, 204, 210, 251, 280, 311, 594
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
MflI	RGATCY	3 cut(s)	171, 202, 278
MluCI	AATT	2 cut(s)	139, 195
MlyI	GAGTC	3 cut(s)	22, 296, 437
MmeI	TCCRAC	2 cut(s)	462, 651
MspI	CCGG	2 cut(s)	276, 616
MspR9I	CCNGG	4 cut(s)	293, 320, 388, 562
MvaI	CCWGG	4 cut(s)	293, 320, 388, 562
MvnI	CGCG	2 cut(s)	330, 480
MwoI	GCNNNNNNNGC	5 cut(s)	320, 329, 398, 500, 654
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
NlaIII	CATG	1 cut(s)	811
NlaIV	GGNNCC	2 cut(s)	280, 840
NmeAIII	GCCGAG	2 cut(s)	418, 525
PasI	CCCWGGG	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	3 cut(s)	423, 507, 660
PfeI	GAWTC	2 cut(s)	125, 743
PflFI	GACNNNGTC	2 cut(s)	220, 356
PkrI	GCNGC	4 cut(s)	271, 274, 383, 559
PleI	GAGTC	3 cut(s)	22, 295, 436
PpsI	GAGTC	3 cut(s)	22, 295, 436
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	4 cut(s)	291, 318, 386, 560
PspFI	CCCAGC	2 cut(s)	300, 375
PspGI	CCWGG	4 cut(s)	291, 318, 386, 560
PspN4I	GGNNCC	2 cut(s)	280, 840
PspPI	GGNCC	2 cut(s)	390, 646
PsrI	GAACNNNNNNTAC	2 cut(s)	455, 487
PsuI	RGATCY	3 cut(s)	171, 202, 278
PsyI	GACNNNGTC	2 cut(s)	220, 356
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
SatI	GCNGC	4 cut(s)	270, 273, 382, 558
Sau3AI	GATC	7 cut(s)	171, 202, 208, 249, 278, 309, 592
Sau96I	GGNCC	2 cut(s)	390, 646
SchI	GAGTC	3 cut(s)	22, 296, 437
ScrFI	CCNGG	4 cut(s)	293, 320, 388, 562
SfiI	GGCCNNNNNGGCC	1 cut(s)	654
Sse9I	AATT	2 cut(s)	139, 195
SseBI	AGGCCT	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	291, 318, 386, 560
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	3 cut(s)	232, 358, 719
TaqI	TCGA	3 cut(s)	112, 285, 768
TasI	AATT	2 cut(s)	139, 195
TauI	GCSGC	4 cut(s)	272, 275, 384, 560
TfiI	GAWTC	2 cut(s)	125, 743
TspDTI	ATGAA	3 cut(s)	325, 702, 770
TspGWI	ACGGA	2 cut(s)	440, 676
Tth111I	GACNNNGTC	2 cut(s)	220, 356
XapI	RAATTY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.