Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

241212 .. 242322

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGTCAACAAATCCCCCTGTTCTTCCAATTTCCACCACCGCAACAGACACCACCAATCAGCCTCCGATTGTAACCGCTGTGGTGGAATCGCAACCTCCAGTCGTCCGTGCATTTGTCAACGGTGTGACCGAGACGGTCTGTGGTGGTCTATCTCGTAGCCGTCCGTGGTCAGAGCTCCTCGATCGATCCGCTTTCACAAAGCCTGACTCTCTCTCCGAGGCCGGGACGCGATTCCGGAAAAATTCCTCTTATTTCAGGGTGAATTACGTTTGCATTGTCGCTCTGATCCTTGGTTTCTCTCTTCTCGCCCACCCATTCTCTCTCATCCTCCTCCTATGTCTCGCCGCTTCCTGGCTCTTCCTCTACCTCTTCCGTCCATCAGATCGTCCTCTTATCCTCTTCGGCCGATCTTTCTCCGAATACGAAACTCTCGGTGGCCTAATCCTCTCCACGATCGCAGTGATCTTCTTCACAAGCGTCGGATCTGTATTGATATCCGCTCTCATGATCGGAATAGCAACAATCTGTGTCCATGGCGCCTTTAGAGCTCCCGATGATCTCTTCCTCGACGAACAAGATCATGCCGCCTCCGGATTCCTCTCATTCATCGGTGTTCCCGCGATCCCCTCTGTAGCACCCTCTGCCTCCTCAGCGGCTTCCCCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

223

Amino Acids

23.81

Weight (kDa)

5.87

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	51 - 193	2.2e-48	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	503
AccII	CGCG	2 cut(s)	232, 623
AccIII	TCCGGA	2 cut(s)	237, 593
AciI	CCGC	8 cut(s)	42, 78, 192, 348, 501, 588, 621, 656
AclWI	GGATC	4 cut(s)	183, 283, 493, 619
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	225, 354
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	178, 551
AluI	AGCT	2 cut(s)	178, 551
Alw21I	GWGCWC	2 cut(s)	180, 553
Alw26I	GTCTC	2 cut(s)	128, 347
AlwI	GGATC	4 cut(s)	183, 283, 493, 619
Aor13HI	TCCGGA	2 cut(s)	237, 593
AoxI	GGCC	3 cut(s)	222, 406, 439
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	2 cut(s)	180, 553
Bbv12I	GWGCWC	2 cut(s)	180, 553
BbvCI	CCTCAGC	1 cut(s)	652
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	128, 347
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	543
BisI	GCNGC	3 cut(s)	348, 588, 657
BlsI	GCNGC	3 cut(s)	349, 589, 658
Bme1390I	CCNGG	2 cut(s)	226, 355
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	2 cut(s)	226, 355
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	167, 219, 292, 535
BsaWI	WCCGGW	2 cut(s)	237, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 354
Bse1I	ACTGG	1 cut(s)	101
BseAI	TCCGGA	2 cut(s)	237, 593
BseBI	CCWGG	1 cut(s)	355
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	4 cut(s)	167, 219, 292, 535
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	225, 354
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	3 cut(s)	170, 323, 640
BseX3I	CGGCCG	1 cut(s)	406
Bsh1236I	CGCG	2 cut(s)	232, 623
Bsh1285I	CGRYCG	3 cut(s)	187, 409, 459
BshFI	GGCC	3 cut(s)	224, 408, 441
BshNI	GGYRCC	1 cut(s)	539
BshVI	ATCGAT	1 cut(s)	187
BsiEI	CGRYCG	3 cut(s)	187, 409, 459
BsiHKAI	GWGCWC	2 cut(s)	180, 553
BsiSI	CCGG	3 cut(s)	225, 238, 594
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	225, 354
BsmAI	GTCTC	2 cut(s)	128, 347
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	224, 408, 441
Bsp1286I	GDGCHC	2 cut(s)	180, 553
Bsp13I	TCCGGA	2 cut(s)	237, 593
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	8 cut(s)	42, 78, 192, 348, 501, 588, 621, 656
BspANI	GGCC	3 cut(s)	224, 408, 441
BspCNI	CTCAG	1 cut(s)	665
BspDI	ATCGAT	1 cut(s)	187
BspEI	TCCGGA	2 cut(s)	237, 593
BspFNI	CGCG	2 cut(s)	232, 623
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	4 cut(s)	183, 283, 493, 619
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	167, 219, 292, 535
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	292, 535
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	125, 139
Bst6I	CTCTTC	5 cut(s)	309, 365, 377, 407, 569
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstDEI	CTNAG	1 cut(s)	652
BstDSI	CCRYGG	2 cut(s)	167, 535
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	232, 623
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstMAI	GTCTC	2 cut(s)	128, 347
BstMCI	CGRYCG	3 cut(s)	187, 409, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 644, 653
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	224, 353
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	2 cut(s)	232, 623
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	224, 408, 441
BsuTUI	ATCGAT	1 cut(s)	187
BtgI	CCRYGG	2 cut(s)	167, 535
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	542
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	2 cut(s)	238, 469
CviAII	CATG	3 cut(s)	508, 536, 584
DdeI	CTNAG	1 cut(s)	652
DinI	GGCGCC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	406
EagI	CGGCCG	1 cut(s)	406
Eam1104I	CTCTTC	5 cut(s)	309, 365, 377, 407, 569
EarI	CTCTTC	5 cut(s)	309, 365, 377, 407, 569
Ecl136II	GAGCTC	2 cut(s)	178, 551
EclXI	CGGCCG	1 cut(s)	406
Eco130I	CCWWGG	2 cut(s)	292, 535
Eco24I	GRGCYC	2 cut(s)	180, 553
Eco32I	GATATC	1 cut(s)	498
Eco52I	CGGCCG	1 cut(s)	406
Eco53kI	GAGCTC	2 cut(s)	178, 551
EcoICRI	GAGCTC	2 cut(s)	178, 551
EcoRII	CCWGG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	292, 535
EcoT38I	GRGCYC	2 cut(s)	180, 553
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	292, 535
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	511, 539, 587
FaiI	YATR	4 cut(s)	340, 509, 537, 585
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	3 cut(s)	507, 535, 583
FauI	CCCGC	1 cut(s)	628
Fnu4HI	GCNGC	3 cut(s)	348, 588, 657
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	180, 553
Fsp4HI	GCNGC	3 cut(s)	348, 588, 657
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	3 cut(s)	348, 588, 657
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	224, 408, 441
HapII	CCGG	3 cut(s)	225, 238, 594
HgaI	GACGC	2 cut(s)	238, 469
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	3 cut(s)	511, 539, 587
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	2 cut(s)	9, 121
HindII	GTYRAC	2 cut(s)	9, 121
HinfI	GANTC	4 cut(s)	89, 209, 234, 597
HpaII	CCGG	3 cut(s)	225, 238, 594
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	9, 121
Hpy188I	TCNGA	8 cut(s)	69, 175, 220, 288, 385, 421, 485, 515
Hpy188III	TCNNGA	4 cut(s)	238, 508, 554, 594
Hpy8I	GTNNAC	2 cut(s)	9, 121
Hpy99I	CGWCG	2 cut(s)	485, 575
HpyCH4III	ACNGT	2 cut(s)	125, 139
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	113, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 644, 653
HpyF3I	CTNAG	1 cut(s)	652
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	511, 539, 587
HspAI	GCGC	1 cut(s)	540
KasI	GGCGCC	1 cut(s)	539
Kpn2I	TCCGGA	2 cut(s)	237, 593
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	183, 556
LpnPI	CCDG	9 cut(s)	33, 114, 219, 238, 244, 251, 340, 367, 607
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	73, 127
MbiI	CCGCTC	1 cut(s)	503
MboII	GAAGA	8 cut(s)	17, 296, 352, 364, 394, 460, 463, 556
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	180, 553
MluCI	AATT	3 cut(s)	30, 244, 265
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	463
MroI	TCCGGA	2 cut(s)	237, 593
MspA1I	CMGCKG	2 cut(s)	80, 656
MspI	CCGG	3 cut(s)	225, 238, 594
MspR9I	CCNGG	2 cut(s)	226, 355
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	2 cut(s)	232, 623
MwoI	GCNNNNNNNGC	3 cut(s)	548, 644, 653
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	535
NlaIII	CATG	3 cut(s)	511, 539, 587
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	89, 234, 597
PkrI	GCNGC	3 cut(s)	349, 589, 658
Ple19I	CGATCG	2 cut(s)	187, 459
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	203
Psp124BI	GAGCTC	2 cut(s)	180, 553
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	485
PvuI	CGATCG	2 cut(s)	187, 459
SacI	GAGCTC	2 cut(s)	180, 553
SapI	GCTCTTC	1 cut(s)	365
SatI	GCNGC	3 cut(s)	348, 588, 657
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	226, 355
SduI	GDGCHC	2 cut(s)	180, 553
SetI	ASST	5 cut(s)	100, 180, 273, 372, 553
SfcI	CTRYAG	1 cut(s)	633
SfoI	GGCGCC	1 cut(s)	541
Sse9I	AATT	3 cut(s)	30, 244, 265
SsiI	CCGC	8 cut(s)	42, 78, 192, 348, 501, 588, 621, 656
SspDI	GGCGCC	1 cut(s)	539
SstI	GAGCTC	2 cut(s)	180, 553
StyD4I	CCNGG	2 cut(s)	224, 353
StyI	CCWWGG	2 cut(s)	292, 535
TaaI	ACNGT	2 cut(s)	125, 139
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	183, 187, 570
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	30, 244, 265
TauI	GCSGC	3 cut(s)	350, 590, 659
TfiI	GAWTC	3 cut(s)	89, 234, 597
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	598
TspGWI	ACGGA	3 cut(s)	98, 156, 365
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.