Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1180 .. 1536

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00005.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACGCGATTCTGGAAGAACTCCTCTTATTTCAGGGTGAATTACGTCTGCATCATCGCTCTGATCATCAGTTTCTCTCTTCCCGCCCACCCATTCTCGCTCATCCTCCTCCTATGCCTCGCCGCTTCATGGCTCTTCCTCTACCTCTTCCGTCCATCCGATCGACCTCTTATCCTCATCGGCCGATCTTTCTCCGAATACGAGACTCTCGGTGGCTTGATACTATCCACGATCGCCGTGATCTTTTTCACCAGCGTCGGATCTGTACTGATATCCGCTCTCATGATCGGAATAACAACAATTCCACCCCTGGTCGACGAATTCTTTGTCCTGGTCGAGGATTCCATCACCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016032 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

5.62

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	2 - 101	7.4e-25	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	84, 123, 276
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	129, 337, 351
AjnI	CCWGG	3 cut(s)	309, 330, 350
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 312, 340, 344
AsuHPI	GGTGA	3 cut(s)	49, 241, 340
BccI	CCATC	2 cut(s)	163, 353
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	311, 332, 352
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	311, 332, 352
BmrFI	CCNGG	3 cut(s)	311, 332, 352
BmsI	GCATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 337, 351
BseBI	CCWGG	3 cut(s)	311, 332, 352
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	102, 155
BseLI	CCNNNNNNNGG	3 cut(s)	129, 337, 351
BseRI	GAGGAG	2 cut(s)	13, 98
BseX3I	CGGCCG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	3 cut(s)	163, 184, 234
BshFI	GGCC	1 cut(s)	183
BsiEI	CGRYCG	3 cut(s)	163, 184, 234
BslI	CCNNNNNNNGG	3 cut(s)	129, 337, 351
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
BspACI	CCGC	3 cut(s)	84, 123, 276
BspANI	GGCC	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	282
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
Bst2UI	CCWGG	3 cut(s)	311, 332, 352
Bst6I	CTCTTC	3 cut(s)	84, 140, 152
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	102, 155
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	7 cut(s)	66, 163, 188, 234, 243, 263, 288
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
BstMCI	CGRYCG	3 cut(s)	163, 184, 234
BstNI	CCWGG	3 cut(s)	311, 332, 352
BstSCI	CCNGG	3 cut(s)	309, 330, 350
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	102, 155
CciI	TCATGA	1 cut(s)	282
CseI	GACGC	2 cut(s)	13, 244
CsiI	ACCWGGT	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	129, 283
CviJI	RGCY	3 cut(s)	133, 183, 216
CviKI_1	RGCY	3 cut(s)	133, 183, 216
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	7 cut(s)	65, 162, 187, 233, 242, 262, 287
DpnII	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
Eam1104I	CTCTTC	3 cut(s)	84, 140, 152
EarI	CTCTTC	3 cut(s)	84, 140, 152
EclXI	CGGCCG	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	309, 330, 350
EcoRV	GATATC	1 cut(s)	273
FaeI	CATG	2 cut(s)	132, 286
FaiI	YATR	3 cut(s)	115, 130, 284
FatI	CATG	2 cut(s)	128, 282
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	89, 142
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	2 cut(s)	13, 244
Hin1II	CATG	2 cut(s)	132, 286
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	9, 205, 341
HphI	GGTGA	3 cut(s)	49, 241, 340
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	5 cut(s)	63, 160, 196, 260, 290
Hpy188III	TCNNGA	2 cut(s)	13, 283
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	260, 320
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	132, 286
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
LguI	GCTCTTC	1 cut(s)	140
LpnPI	CCDG	7 cut(s)	19, 265, 296, 317, 323, 337, 344
LweI	GCATC	1 cut(s)	60
MabI	ACCWGGT	1 cut(s)	350
MaeII	ACGT	1 cut(s)	45
MalI	GATC	7 cut(s)	65, 162, 187, 233, 242, 262, 287
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
MboII	GAAGA	4 cut(s)	28, 71, 127, 139
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	3 cut(s)	40, 300, 320
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	9 cut(s)	34, 116, 119, 128, 149, 155, 177, 185, 331
MspR9I	CCNGG	3 cut(s)	311, 332, 352
MvaI	CCWGG	3 cut(s)	311, 332, 352
MvnI	CGCG	1 cut(s)	7
NdeII	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
NlaIII	CATG	2 cut(s)	132, 286
PagI	TCATGA	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	9, 341
PflMI	CCANNNNNTGG	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	124
Ple19I	CGATCG	2 cut(s)	163, 234
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	309, 330, 350
PspGI	CCWGG	3 cut(s)	309, 330, 350
PsuI	RGATCY	1 cut(s)	260
PvuI	CGATCG	2 cut(s)	163, 234
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	140
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	7 cut(s)	63, 160, 185, 231, 240, 260, 285
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	311, 332, 352
SetI	ASST	4 cut(s)	48, 147, 169, 353
SexAI	ACCWGGT	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	40, 300, 320
SsiI	CCGC	3 cut(s)	84, 123, 276
StyD4I	CCNGG	3 cut(s)	309, 330, 350
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	163, 315, 336
TasI	AATT	3 cut(s)	40, 300, 320
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	9, 341
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.