Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

53969267 .. 53973342

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATTCTCAAAATCCACAAAAAGCATCATTCTAGGGTTAAGTCTTCCTTTCCTGCAGACATCTTCTGGAGGTACGTCTACAACCCCAACTTCAGTGGCCATAATAACTCGTCCACTGTGGGTGATGTTAAAGCCACCCGGTCGGAGTCTATTCATATCCAATGTAGCTCCCAGATAGCGTCCATCAGTAACTGCAATAATTCCGAGCTTGCCAACCGCTCCGCCTTCGCCAAGCTCGAGTCCTTCTCCTTCGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTCGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTTTTTATCTTCGGCGGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCGGTGTCTTCGTAGTCTTCCTCACCTCCGTCGGGGTGTGTTAAGAGCGAGGTTGCGAATCACCTCGGATGAAAGAAGCCATCGACCATCAAAACTCGTTCCTCGTGCTTCAACCCGAGACCATGGAGAAGCTCCGGCGACAACACAATCAGCTGAGTCTCATGCACAACCTAGAAATGTGCTTGATCCTGATGAAACTGAACGCGAGTATCTGACACTGAAGATGGTGTTCTCCCAGCTGGAAGCTGCAAGAATTTGCTCTCCTATTTTTCCCATCCATCAGAATTCCACACACAAACCTGAAGAAGAGGAGGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

256

Amino Acids

28.9

Weight (kDa)

10.12

Isoelectric Point (pI)

66.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	3 cut(s)	264, 270, 654
AciI	CCGC	7 cut(s)	217, 222, 262, 268, 348, 374, 406
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	702, 733
AcuI	CTGAAG	3 cut(s)	76, 689, 771
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	561
AluBI	AGCT	7 cut(s)	168, 208, 235, 581, 602, 688, 695
AluI	AGCT	7 cut(s)	168, 208, 235, 581, 602, 688, 695
Alw26I	GTCTC	3 cut(s)	313, 561, 612
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	2 cut(s)	236, 564
AoxI	GGCC	4 cut(s)	97, 337, 437, 446
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	702, 733
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	134, 310, 464, 502
AvaI	CYCGRG	2 cut(s)	236, 564
BaeI	ACNNNNGTAYC	2 cut(s)	641, 674
BalI	TGGCCA	1 cut(s)	99
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	3 cut(s)	36, 449, 458
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	6 cut(s)	191, 537, 544, 667, 731, 735
BceAI	ACGGC	2 cut(s)	269, 290
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	313, 561, 612
BfaI	CTAG	2 cut(s)	33, 621
BfmI	CTRYAG	1 cut(s)	54
BglI	GCCNNNNNGGC	2 cut(s)	353, 445
BisI	GCNGC	2 cut(s)	348, 696
BlsI	GCNGC	2 cut(s)	349, 697
Bme1390I	CCNGG	1 cut(s)	139
BmeT110I	CYCGRG	2 cut(s)	236, 564
BmgT120I	GGNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	3 cut(s)	36, 449, 458
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	5 cut(s)	334, 351, 449, 513, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
BseDI	CCNNGG	5 cut(s)	334, 351, 449, 513, 571
BseGI	GGATG	2 cut(s)	523, 723
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	682
BseYI	CCCAGC	1 cut(s)	684
Bsh1236I	CGCG	3 cut(s)	264, 270, 654
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	4 cut(s)	99, 339, 439, 448
BsiEI	CGRYCG	1 cut(s)	143
BsiHKCI	CYCGRG	2 cut(s)	236, 564
BsiSI	CCGG	2 cut(s)	139, 584
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	313, 561, 612
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	99, 339, 439, 448
Bso31I	GGTCTC	1 cut(s)	561
BsoBI	CYCGRG	2 cut(s)	236, 564
Bsp143I	GATC	2 cut(s)	383, 634
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	7 cut(s)	217, 222, 262, 268, 348, 374, 406
BspANI	GGCC	4 cut(s)	99, 339, 439, 448
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	3 cut(s)	264, 270, 654
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	219
BssECI	CCNNGG	5 cut(s)	334, 351, 449, 513, 571
BssMI	GATC	2 cut(s)	383, 634
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	571
Bst2BI	CACGAG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	4 cut(s)	320, 363, 375, 750
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	523, 723
BstFNI	CGCG	3 cut(s)	264, 270, 654
BstKTI	GATC	2 cut(s)	386, 637
BstMAI	GTCTC	3 cut(s)	313, 561, 612
BstMBI	GATC	2 cut(s)	383, 634
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 353, 445
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	3 cut(s)	264, 270, 654
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	3 cut(s)	36, 449, 458
BsuRI	GGCC	4 cut(s)	99, 339, 439, 448
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	523, 723
BtsIMutI	CAGTG	3 cut(s)	100, 114, 665
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	3 cut(s)	168, 253, 259
Csp6I	GTAC	1 cut(s)	73
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	2 cut(s)	572, 611
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	2 cut(s)	385, 636
DpnII	GATC	2 cut(s)	383, 634
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	320, 363, 375, 750
EarI	CTCTTC	4 cut(s)	320, 363, 375, 750
EciI	GGCGGA	2 cut(s)	211, 363
Eco130I	CCWWGG	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	561
Eco57I	CTGAAG	3 cut(s)	76, 689, 771
Eco88I	CYCGRG	2 cut(s)	236, 564
EcoRI	GAATTC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	2 cut(s)	575, 614
FaiI	YATR	5 cut(s)	102, 156, 573, 612, 769
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	571, 610
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	348, 696
FokI	GGATG	2 cut(s)	530, 710
Fsp4HI	GCNGC	2 cut(s)	348, 696
FspBI	CTAG	2 cut(s)	33, 621
GluI	GCNGC	2 cut(s)	348, 696
GsaI	CCCAGC	1 cut(s)	688
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	99, 339, 439, 448
HapII	CCGG	2 cut(s)	139, 584
HgaI	GACGC	3 cut(s)	168, 253, 259
Hin1II	CATG	2 cut(s)	575, 614
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	6 cut(s)	4, 146, 239, 507, 605, 764
HpaII	CCGG	2 cut(s)	139, 584
HphI	GGTGA	4 cut(s)	134, 310, 464, 502
Hpy166II	GTNNAC	3 cut(s)	79, 114, 274
Hpy188I	TCNGA	7 cut(s)	145, 205, 383, 419, 517, 663, 732
Hpy188III	TCNNGA	2 cut(s)	67, 638
Hpy8I	GTNNAC	3 cut(s)	79, 114, 274
Hpy99I	CGWCG	5 cut(s)	290, 293, 305, 447, 483
HpyAV	CCTTC	4 cut(s)	235, 253, 259, 337
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	56, 195, 614, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 353, 445
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	575, 614
Kzo9I	GATC	2 cut(s)	383, 634
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	173, 224, 586
LpnPI	CCDG	9 cut(s)	52, 66, 152, 185, 597, 651, 674, 698, 762
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	33, 621
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	385, 636
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	2 cut(s)	383, 634
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	199, 702, 733
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	3 cut(s)	155, 248, 614
MmeI	TCCRAC	2 cut(s)	123, 442
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	39, 129, 491
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	602, 688
MspI	CCGG	2 cut(s)	139, 584
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	3 cut(s)	264, 270, 654
MwoI	GCNNNNNNNGC	3 cut(s)	290, 353, 445
NciI	CCSGG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	2 cut(s)	383, 634
NlaIII	CATG	2 cut(s)	575, 614
NmeAIII	GCCGAG	2 cut(s)	315, 332
PaeR7I	CTCGAG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	3 cut(s)	234, 297, 457
PfeI	GAWTC	3 cut(s)	4, 507, 764
PkrI	GCNGC	2 cut(s)	349, 697
PleI	GAGTC	3 cut(s)	154, 247, 613
PpsI	GAGTC	3 cut(s)	154, 247, 613
PspFI	CCCAGC	1 cut(s)	684
PspPI	GGNCC	1 cut(s)	437
PspXI	VCTCGAGB	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	192
PvuII	CAGCTG	2 cut(s)	602, 688
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	39, 129, 491
SatI	GCNGC	2 cut(s)	348, 696
Sau3AI	GATC	2 cut(s)	383, 634
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	3 cut(s)	155, 248, 614
ScrFI	CCNGG	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	54
SfiI	GGCCNNNNNGGCC	1 cut(s)	445
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	199, 702, 733
SsiI	CCGC	7 cut(s)	217, 222, 262, 268, 348, 374, 406
SspMI	CTAG	2 cut(s)	33, 621
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	237, 532
TasI	AATT	3 cut(s)	199, 702, 733
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	4, 507, 764
Tru1I	TTAA	3 cut(s)	39, 129, 491
Tru9I	TTAA	3 cut(s)	39, 129, 491
TscAI	CASTG	3 cut(s)	100, 121, 672
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	143, 534, 657
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	3 cut(s)	100, 121, 672
XapI	RAATTY	2 cut(s)	702, 733
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	33, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.