Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

17580416 .. 17581090

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCGACTCCGACACCCCCGCCGCTCCTCCCGGTCTCTACAACCGCAACAGCCGTCAGCGGCGGCACGGCCCAGTCCCAGGCTCCCATCGCTACCCCGGCCTTCCGCGCCTTCATCAACCACATCTCCGACACCTGCCGCAACGGCCTCGCCCAGCGCCGCCCCTGGTCCGAGCTCCTCGACCGATCCGCCTTCGCCAAGCCAGAATCCTTCTCCGACGCCACCGTCCGCGTTCGCAAGAACTACTCCTACTTCCGTGTCAACTACCTCGCCGTCCTCGCCCTCACCGTCGCTCTTTCCCTCTTCACCCACCCTTTTTCCCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTCATCTTCGGCCGCACGTTTTCCGACACCCAGACCCTCTTGGGCCTCACCGCCCTCTCCGTCTTCGTCGTCTTCCTCACATCCGTCGGATCCGTCCTCATCTCCGCTCTCGTCGTCGGTGCCGCAGTCGTCTTCGCTCACGGCGCCTTTAGGGTTCCCGAGGACCTCTTCCTTGACGAGCAAGAGCCTACCGCCTCCACCGGTTTCCTCTCCTTCCTCAACGGCGCTGCTTCCAATGTCGCTGCCGCCACATCGCCAGCCGTCGTCGCCGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

225

Amino Acids

23.81

Weight (kDa)

8.97

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	49 - 192	4.2e-52	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	512, 536
AccBSI	CCGCTC	3 cut(s)	25, 500, 665
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	108, 231, 669
AclWI	GGATC	3 cut(s)	180, 477, 490
AcoI	YGGCCR	1 cut(s)	403
AcyI	GRCGYC	2 cut(s)	219, 537
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgeI	ACCGGT	1 cut(s)	593
AjnI	CCWGG	3 cut(s)	78, 164, 350
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	180, 477, 490
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	6 cut(s)	69, 99, 145, 337, 403, 436
ApeKI	GCWGC	2 cut(s)	620, 635
AsiGI	ACCGGT	1 cut(s)	593
AspLEI	GCGC	4 cut(s)	110, 159, 539, 620
AspS9I	GGNCC	4 cut(s)	70, 168, 436, 556
AsuC2I	CCSGG	2 cut(s)	32, 98
AsuHPI	GGTGA	3 cut(s)	277, 298, 433
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	168, 556
BamHI	GGATCC	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	512, 536
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	3 cut(s)	448, 457, 517
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	607, 622
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	7 cut(s)	38, 84, 160, 257, 550, 631, 638
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	3 cut(s)	80, 166, 352
BcnI	CCSGG	2 cut(s)	32, 98
BcoDI	GTCTC	1 cut(s)	40
BfoI	RGCGCY	3 cut(s)	160, 540, 621
BfuAI	ACCTGC	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	144
Bme1390I	CCNGG	5 cut(s)	32, 80, 98, 166, 352
Bme18I	GGWCC	2 cut(s)	168, 556
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	70, 168, 436, 556
BmiI	GGNNCC	5 cut(s)	84, 484, 514, 538, 549
BmrFI	CCNGG	5 cut(s)	32, 80, 98, 166, 352
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	3 cut(s)	448, 457, 517
BpuMI	CCSGG	2 cut(s)	32, 98
BsaHI	GRCGYC	2 cut(s)	219, 537
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	5 cut(s)	78, 96, 164, 334, 552
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	3 cut(s)	80, 166, 352
BseDI	CCNNGG	5 cut(s)	78, 96, 164, 334, 552
BseGI	GGATG	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	5 cut(s)	17, 167, 314, 323, 332
BseX3I	CGGCCG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	607, 622
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	3 cut(s)	108, 231, 669
Bsh1285I	CGRYCG	2 cut(s)	184, 406
BshFI	GGCC	6 cut(s)	71, 101, 147, 339, 405, 438
BshNI	GGYRCC	2 cut(s)	512, 536
BshTI	ACCGGT	1 cut(s)	593
BsiEI	CGRYCG	2 cut(s)	184, 406
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	3 cut(s)	32, 98, 594
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	6 cut(s)	71, 101, 147, 339, 405, 438
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	185, 382, 482
BspANI	GGCC	6 cut(s)	71, 101, 147, 339, 405, 438
BspFNI	CGCG	3 cut(s)	108, 231, 669
BspLI	GGNNCC	5 cut(s)	84, 484, 514, 538, 549
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	3 cut(s)	180, 477, 490
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	512, 536
BspTNI	GGTCTC	1 cut(s)	40
BsrBI	CCGCTC	3 cut(s)	25, 500, 665
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	5 cut(s)	78, 96, 164, 334, 552
BssMI	GATC	3 cut(s)	185, 382, 482
BssNI	GRCGYC	2 cut(s)	219, 537
Bst2UI	CCWGG	3 cut(s)	80, 166, 352
Bst4CI	ACNGT	2 cut(s)	226, 289
Bst6I	CTCTTC	4 cut(s)	308, 362, 374, 566
BstACI	GRCGYC	2 cut(s)	219, 537
BstC8I	GCNNGC	2 cut(s)	651, 667
BstF5I	GGATG	1 cut(s)	473
BstFNI	CGCG	3 cut(s)	108, 231, 669
BstH2I	RGCGCY	3 cut(s)	160, 540, 621
BstHHI	GCGC	4 cut(s)	110, 159, 539, 620
BstKTI	GATC	3 cut(s)	188, 385, 485
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	185, 382, 482
BstMCI	CGRYCG	2 cut(s)	184, 406
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 144, 278, 536, 659
BstNI	CCWGG	3 cut(s)	80, 166, 352
BstSCI	CCNGG	5 cut(s)	30, 78, 96, 164, 350
BstUI	CGCG	3 cut(s)	108, 231, 669
BstV1I	GCAGC	2 cut(s)	607, 622
BstV2I	GAAGAC	3 cut(s)	448, 457, 517
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BstZI	CGGCCG	1 cut(s)	403
BsuRI	GGCC	6 cut(s)	71, 101, 147, 339, 405, 438
BtgZI	GCGATG	2 cut(s)	73, 630
BtsCI	GGATG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	651, 667
CfoI	GCGC	4 cut(s)	110, 159, 539, 620
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	4 cut(s)	70, 168, 436, 556
CseI	GACGC	1 cut(s)	227
CspAI	ACCGGT	1 cut(s)	593
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	3 cut(s)	187, 384, 484
DpnII	GATC	3 cut(s)	185, 382, 482
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	403
EagI	CGGCCG	1 cut(s)	403
Eam1104I	CTCTTC	4 cut(s)	308, 362, 374, 566
EarI	CTCTTC	4 cut(s)	308, 362, 374, 566
EciI	GGCGGA	2 cut(s)	178, 362
Ecl136II	GAGCTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	168, 556
Eco52I	CGGCCG	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	3 cut(s)	78, 164, 350
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
FaqI	GGGAC	1 cut(s)	61
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	1 cut(s)	177
GlaI	GCGC	4 cut(s)	109, 158, 538, 619
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	3 cut(s)	160, 540, 621
HaeIII	GGCC	6 cut(s)	71, 101, 147, 339, 405, 438
HapII	CCGG	3 cut(s)	32, 98, 594
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	4 cut(s)	110, 159, 539, 620
Hin1I	GRCGYC	2 cut(s)	219, 537
Hin6I	GCGC	4 cut(s)	108, 157, 537, 618
HinP1I	GCGC	4 cut(s)	108, 157, 537, 618
HincII	GTYRAC	2 cut(s)	6, 262
HindII	GTYRAC	2 cut(s)	6, 262
HinfI	GANTC	2 cut(s)	7, 206
HpaII	CCGG	3 cut(s)	32, 98, 594
HphI	GGTGA	3 cut(s)	277, 298, 433
Hpy166II	GTNNAC	2 cut(s)	6, 262
Hpy188I	TCNGA	7 cut(s)	12, 130, 172, 217, 382, 418, 482
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	2 cut(s)	6, 262
Hpy99I	CGWCG	8 cut(s)	221, 293, 464, 482, 509, 512, 659, 662
HpyAV	CCTTC	5 cut(s)	112, 121, 202, 220, 616
HpyCH4III	ACNGT	2 cut(s)	226, 289
HpyCH4IV	ACGT	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 144, 278, 536, 659
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	2 cut(s)	219, 537
HspAI	GCGC	4 cut(s)	108, 157, 537, 618
KasI	GGCGCC	1 cut(s)	536
Kzo9I	GATC	3 cut(s)	185, 382, 482
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	3 cut(s)	30, 88, 180
Lsp1109I	GCAGC	2 cut(s)	607, 622
MaeII	ACGT	1 cut(s)	410
MalI	GATC	3 cut(s)	187, 384, 484
MbiI	CCGCTC	3 cut(s)	25, 500, 665
MboI	GATC	3 cut(s)	185, 382, 482
MboII	GAAGA	8 cut(s)	295, 349, 361, 391, 448, 457, 517, 553
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	177
Mly113I	GGCGCC	1 cut(s)	537
MmeI	TCCRAC	5 cut(s)	35, 153, 240, 441, 460
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	3 cut(s)	32, 98, 594
MspR9I	CCNGG	5 cut(s)	32, 80, 98, 166, 352
MvaI	CCWGG	3 cut(s)	80, 166, 352
MvnI	CGCG	3 cut(s)	108, 231, 669
MwoI	GCNNNNNNNGC	7 cut(s)	89, 98, 107, 144, 278, 536, 659
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	2 cut(s)	32, 98
NdeII	GATC	3 cut(s)	185, 382, 482
NlaIV	GGNNCC	5 cut(s)	84, 484, 514, 538, 549
NmeAIII	GCCGAG	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	593
PluTI	GGCGCC	1 cut(s)	540
PpuMI	RGGWCCY	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	3 cut(s)	78, 164, 350
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	78, 164, 350
PspN4I	GGNNCC	5 cut(s)	84, 484, 514, 538, 549
PspPI	GGNCC	4 cut(s)	70, 168, 436, 556
PspPPI	RGGWCCY	1 cut(s)	556
PsrI	GAACNNNNNNTAC	2 cut(s)	233, 265
PsuI	RGATCY	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	362
Sau3AI	GATC	3 cut(s)	185, 382, 482
Sau96I	GGNCC	4 cut(s)	70, 168, 436, 556
ScrFI	CCNGG	5 cut(s)	32, 80, 98, 166, 352
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	137, 177, 270, 369, 413, 561
SfoI	GGCGCC	1 cut(s)	538
SinI	GGWCC	2 cut(s)	168, 556
SspDI	GGCGCC	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	5 cut(s)	30, 78, 96, 164, 350
TaaI	ACNGT	2 cut(s)	226, 289
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	5, 180
TaqII	GACCGA	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	620, 635
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	4 cut(s)	245, 442, 466, 475
VpaK11BI	GGWCC	2 cut(s)	168, 556
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.