Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

2457754 .. 2458089

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCAACCGTCCTCCCAATCTCCACCACCATCGCCTCTACCGGATCCGACGAGTCCCAGGCCCAGCCTTCGATCGCCACCCCTACCTTCCGCGCCTTCATCAACCACATCACCGACACTGTCTGCAACGGCCTCTCCCAGCGCCGCCCATGGGCCGAGCTCGTCGACCGCTCTGCCTTTCCCAAATCGGAATCCTTCTCTGACGCCACCGTCCGTGTCCGCAAGAACCATTTCTACTTCCGTGTCAACTACCTCGCCGTCATCGTCGCAGTCTCCCTCTTCACCCACCCTTCTCCCTCGTCGTCCTCCTCGGCCTCCGGTACATTTTGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

112

Amino Acids

12.09

Weight (kDa)

8.8

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	44 - 95	2e-15	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	91, 145, 169, 220
AclWI	GGATC	2 cut(s)	39, 52
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	39, 52
AoxI	GGCC	4 cut(s)	60, 130, 153, 312
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	95, 144
AspS9I	GGNCC	2 cut(s)	61, 153
AsuHPI	GGTGA	2 cut(s)	103, 274
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	145, 242
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	61, 153
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	57, 149, 309
BsaWI	WCCGGW	2 cut(s)	41, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 149, 309
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	298
BseYI	CCCAGC	2 cut(s)	63, 138
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	2 cut(s)	75, 169
BshFI	GGCC	4 cut(s)	62, 132, 155, 314
BsiEI	CGRYCG	2 cut(s)	75, 169
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	42, 318
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	4 cut(s)	62, 132, 155, 314
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	44, 72
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	4 cut(s)	91, 145, 169, 220
BspANI	GGCC	4 cut(s)	62, 132, 155, 314
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	39, 52
BsrBI	CCGCTC	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	57, 149, 309
BssMI	GATC	2 cut(s)	44, 72
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	10, 121, 211
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	2 cut(s)	95, 144
BstKTI	GATC	2 cut(s)	47, 75
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	44, 72
BstMCI	CGRYCG	2 cut(s)	75, 169
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	62, 132, 155, 314
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	2 cut(s)	95, 144
Cfr13I	GGNCC	2 cut(s)	61, 153
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	6 cut(s)	62, 67, 132, 155, 160, 314
CviKI_1	RGCY	6 cut(s)	62, 67, 132, 155, 160, 314
CviQI	GTAC	1 cut(s)	321
DpnI	GATC	2 cut(s)	46, 74
DpnII	GATC	2 cut(s)	44, 72
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	153
FaiI	YATR	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	2 cut(s)	94, 143
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	2 cut(s)	67, 142
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	62, 132, 155, 314
HapII	CCGG	2 cut(s)	42, 318
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	2 cut(s)	95, 144
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	2 cut(s)	93, 142
HinP1I	GCGC	2 cut(s)	93, 142
HincII	GTYRAC	3 cut(s)	6, 166, 247
HindII	GTYRAC	3 cut(s)	6, 166, 247
HinfI	GANTC	2 cut(s)	53, 191
HpaII	CCGG	2 cut(s)	42, 318
HphI	GGTGA	2 cut(s)	103, 274
Hpy166II	GTNNAC	3 cut(s)	6, 166, 247
Hpy188I	TCNGA	3 cut(s)	49, 190, 202
Hpy8I	GTNNAC	3 cut(s)	6, 166, 247
Hpy99I	CGWCG	4 cut(s)	53, 167, 269, 304
HpyAV	CCTTC	5 cut(s)	78, 97, 106, 205, 300
HpyCH4III	ACNGT	3 cut(s)	10, 121, 211
HpyCH4V	TGCA	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	2 cut(s)	93, 142
Kzo9I	GATC	2 cut(s)	44, 72
LpnPI	CCDG	6 cut(s)	44, 55, 71, 77, 152, 331
MalI	GATC	2 cut(s)	46, 74
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	2 cut(s)	44, 72
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	23, 46, 143, 263, 287, 307, 316, 319, 325
MroXI	GAANNNNTTC	1 cut(s)	230
MspI	CCGG	2 cut(s)	42, 318
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	44, 72
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	2 cut(s)	181, 290
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	146
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	2 cut(s)	63, 138
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	61, 153
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	44, 72
Sau96I	GGNCC	2 cut(s)	61, 153
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	3 cut(s)	89, 162, 255
SsiI	CCGC	4 cut(s)	91, 145, 169, 220
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	10, 121, 211
TaqI	TCGA	2 cut(s)	71, 165
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	2 cut(s)	203, 230
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.