Rorug05G0383700

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002183
Physical Location & Seq
Forward (+)
52064817 .. 52070292
5476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0383700.1

Sequence Viewer

Length: 960 bp
ATGAGTGTACGAGGCAATACGATTGTCCAACCCGTAGGAGATCCAAGTATTGACGGGACACGTTGGCAGACTATTGAAGACATTCAATTGTGCAAGTCTTGGAGGGCTGTTAACCAAGATCAGGCAAAGGGTACGGAACGAAGAAAAGATGATCTATGGATAGAGGTACGCCAACACTATGCCGAACATTGGGATGGATATGTCCGATCATTGCAAGCTTTTCAAGGGAGGTGGAAAACCTTGAAAGTCGAACTTTATGCTTGGCATTGTGCGTTAAGGCAAGCGAAATTGTGGTACAAGAGTGGTGCGAATATGATTGATGAGGTACGTCAAGCACAAGATTTGTGGAGAGCTGCGATGACCAAATCGAAAGGAAAACAAAAAAAAGGTGATTTCATTAGTTTAGAATGTTACGAGATTGTTAAGGGGTTTCAACAATTTGATGACATTCCAAACCATTCCTCTTCGGCTGGAGGAACCTCCAGGGGAGGAACTGAACGGATGCACACACAACAATCCGTTCCTGATTCTCATGTCCAGTTGGACATAGATGCAGATGAGGTAAACGCCGATGCAACTCCCAATCCTTCGGTGAGGCCTCATGGAAAGAAGGCTGCCAAAGAAGCTCTTCGGAAAGGAAAGAAAGCATCTAATGATTCCAGTCCTCTGACAGCCGCTGTGGAGACTATAGCAACCAACCAAACATCAATGCTGTCTGCTAAGGAGAAACGTGATGAGGAATATGCTCGACATCTCCGTGACCAACAACAACTAGATTATATACGCTTGCAATTGGATATTCAAGAGAGGGAATTCAAAAATCAAGAGAGGGAAGAGCGTATTATGGAGATGGACACAAGTAAGATGACGCCAACCAAAAAGAATTACTGGCAAAGAAAACAAAAAAAAATTGCGGAGAAAGAAGCTGAAGATGCAACCCGTGGATCTGGCTTCCCATAA

Protein Analysis

319

Amino Acids

36.71

Weight (kDa)

8.89

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 132 - 304 4.7e-14 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 675, 914
AclWI GGATC 2 cut(s) 35, 952
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 869
AfaI GTAC 5 cut(s) 9, 133, 168, 296, 327
AfiI CCNNNNNNNGG 2 cut(s) 121, 189
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 7 cut(s) 77, 86, 224, 244, 434, 803, 817
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 4 cut(s) 218, 353, 626, 926
AluI AGCT 4 cut(s) 218, 353, 626, 926
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 2 cut(s) 35, 952
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 1 cut(s) 596
ApeKI GCWGC 2 cut(s) 353, 614
ApoI RAATTY 1 cut(s) 812
Asp700I GAANNNNTTC 2 cut(s) 81, 627
AsuHPI GGTGA 2 cut(s) 401, 604
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 340, 601
BccI CCATC 2 cut(s) 188, 844
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 1 cut(s) 773
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 3 cut(s) 354, 615, 675
BlsI GCNGC 3 cut(s) 355, 616, 676
Bme1390I CCNGG 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 5 cut(s) 492, 541, 562, 656, 922
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 466, 492
Bpu10I CCTNAGC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 869
BsaJI CCNNGG 2 cut(s) 483, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 189
Bse1I ACTGG 3 cut(s) 538, 660, 893
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 483, 940
BseGI GGATG 2 cut(s) 199, 507
BseLI CCNNNNNNNGG 2 cut(s) 121, 189
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 3 cut(s) 538, 660, 893
BseXI GCAGC 2 cut(s) 340, 601
BshFI GGCC 1 cut(s) 598
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 121, 189
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 598
Bsp143I GATC 5 cut(s) 40, 118, 151, 206, 944
BspACI CCGC 2 cut(s) 675, 914
BspANI GGCC 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 2 cut(s) 35, 952
BspQI GCTCTTC 2 cut(s) 633, 828
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 3 cut(s) 538, 660, 893
BssECI CCNNGG 2 cut(s) 483, 940
BssMI GATC 5 cut(s) 40, 118, 151, 206, 944
BssNI GRCGYC 1 cut(s) 869
Bst2UI CCWGG 1 cut(s) 484
Bst6I CTCTTC 3 cut(s) 469, 633, 828
BstACI GRCGYC 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 216, 282, 788
BstDEI CTNAG 1 cut(s) 720
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 2 cut(s) 199, 507
BstKTI GATC 5 cut(s) 43, 121, 154, 209, 947
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 5 cut(s) 40, 118, 151, 206, 944
BstMWI GCNNNNNNNGC 2 cut(s) 623, 932
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 687
BstV1I GCAGC 2 cut(s) 340, 601
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 40, 944
BstYI RGATCY 2 cut(s) 40, 944
BsuRI GGCC 1 cut(s) 598
BtgI CCRYGG 1 cut(s) 940
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 199, 507
Cac8I GCNNGC 3 cut(s) 216, 282, 788
CaiI CAGNNNCTG 1 cut(s) 677
CseI GACGC 1 cut(s) 877
Csp6I GTAC 5 cut(s) 8, 132, 167, 295, 326
CspCI CAANNNNNGTGG 4 cut(s) 212, 247, 326, 361
CviAII CATG 2 cut(s) 533, 602
CviQI GTAC 5 cut(s) 8, 132, 167, 295, 326
DdeI CTNAG 1 cut(s) 720
DpnI GATC 5 cut(s) 42, 120, 153, 208, 946
DpnII GATC 5 cut(s) 40, 118, 151, 206, 944
Eam1104I CTCTTC 3 cut(s) 469, 633, 828
EarI CTCTTC 3 cut(s) 469, 633, 828
Eco147I AGGCCT 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 948
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 536, 605
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 612, 644
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 532, 601
Fnu4HI GCNGC 3 cut(s) 354, 615, 675
FokI GGATG 2 cut(s) 206, 514
Fsp4HI GCNGC 3 cut(s) 354, 615, 675
FspBI CTAG 1 cut(s) 773
GluI GCNGC 3 cut(s) 354, 615, 675
GsuI CTGGAG 2 cut(s) 466, 492
HaeIII GGCC 1 cut(s) 598
HgaI GACGC 1 cut(s) 877
Hin1I GRCGYC 1 cut(s) 869
Hin1II CATG 2 cut(s) 536, 605
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 527, 656
HpaI GTTAAC 1 cut(s) 112
HphI GGTGA 2 cut(s) 401, 604
Hpy166II GTNNAC 3 cut(s) 8, 112, 565
Hpy188I TCNGA 3 cut(s) 206, 633, 669
Hpy188III TCNNGA 3 cut(s) 524, 803, 824
Hpy8I GTNNAC 3 cut(s) 8, 112, 565
HpyAV CCTTC 2 cut(s) 597, 604
HpyCH4IV ACGT 3 cut(s) 61, 328, 730
HpyCH4V TGCA 7 cut(s) 93, 214, 505, 554, 575, 790, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 932
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 3 cut(s) 61, 328, 730
Hsp92I GRCGYC 1 cut(s) 869
Hsp92II CATG 2 cut(s) 536, 605
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 40, 118, 151, 206, 944
LguI GCTCTTC 2 cut(s) 633, 828
LpnPI CCDG 9 cut(s) 107, 456, 469, 496, 537, 551, 673, 874, 933
Lsp1109I GCAGC 2 cut(s) 340, 601
LweI GCATC 5 cut(s) 492, 541, 562, 656, 922
MaeI CTAG 1 cut(s) 773
MaeII ACGT 3 cut(s) 61, 328, 730
MaeIII GTNAC 2 cut(s) 410, 758
MalI GATC 5 cut(s) 42, 120, 153, 208, 946
MboI GATC 5 cut(s) 40, 118, 151, 206, 944
MboII GAAGA 6 cut(s) 89, 153, 456, 620, 845, 941
MfeI CAATTG 2 cut(s) 86, 791
MflI RGATCY 2 cut(s) 40, 944
MluCI AATT 7 cut(s) 86, 287, 437, 791, 812, 883, 909
MmeI TCCRAC 2 cut(s) 52, 522
MroXI GAANNNNTTC 2 cut(s) 81, 627
MseI TTAA 3 cut(s) 111, 275, 423
MslI CAYNNNNRTG 2 cut(s) 192, 756
MspA1I CMGCKG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 484
MunI CAATTG 2 cut(s) 86, 791
MvaI CCWGG 1 cut(s) 484
MwoI GCNNNNNNNGC 2 cut(s) 623, 932
NdeII GATC 5 cut(s) 40, 118, 151, 206, 944
NlaIII CATG 2 cut(s) 536, 605
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 758
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 2 cut(s) 633, 828
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PdmI GAANNNNTTC 2 cut(s) 81, 627
PfeI GAWTC 2 cut(s) 527, 656
PkrI GCNGC 3 cut(s) 355, 616, 676
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 40, 944
RsaI GTAC 5 cut(s) 9, 133, 168, 296, 327
RsaNI GTAC 5 cut(s) 8, 132, 167, 295, 326
RseI CAYNNNNRTG 2 cut(s) 192, 756
SapI GCTCTTC 2 cut(s) 633, 828
SaqAI TTAA 3 cut(s) 111, 275, 423
SatI GCNGC 3 cut(s) 354, 615, 675
Sau3AI GATC 5 cut(s) 40, 118, 151, 206, 944
ScrFI CCNGG 1 cut(s) 484
SfaNI GCATC 5 cut(s) 492, 541, 562, 656, 922
SfcI CTRYAG 1 cut(s) 687
SmiMI CAYNNNNRTG 2 cut(s) 192, 756
Sse9I AATT 7 cut(s) 86, 287, 437, 791, 812, 883, 909
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 2 cut(s) 675, 914
SspMI CTAG 1 cut(s) 773
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 1 cut(s) 482
TaiI ACGT 3 cut(s) 64, 331, 733
TaqI TCGA 3 cut(s) 249, 368, 748
TasI AATT 7 cut(s) 86, 287, 437, 791, 812, 883, 909
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 2 cut(s) 527, 656
Tru1I TTAA 3 cut(s) 111, 275, 423
Tru9I TTAA 3 cut(s) 111, 275, 423
TseFI GTSAC 1 cut(s) 758
TseI GCWGC 2 cut(s) 353, 614
Tsp45I GTSAC 1 cut(s) 758
TspDTI ATGAA 1 cut(s) 385
TspGWI ACGGA 4 cut(s) 149, 508, 514, 746
XapI RAATTY 1 cut(s) 812
XmnI GAANNNNTTC 2 cut(s) 81, 627
XspI CTAG 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.