Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

80374102 .. 80375317

Gene Structure 1216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGACTCTTATCTCTTTCTCTTCTTCTGGAAAAATAAACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTTATTGCGTCTATTTCCATCGACCTTCCTCCGATTCTTCAATCACAAATTCCCTTATAAACCCAAAAAGCTCTATCCAGATCTTCACAAAAATACTTGATACAATTTCAAATCCCGATCCACCGACAATGTCAACCACCGTCCCCCCGATCTCCACCACCTCTGTCGCCGCCGCAGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTTCCAACGCCTCCCCTGGGCCGAGCTTGCCTACCGCTCCACCTTCGCCAAGCCTGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTTGCCCTCATCGTCACCGTCTCCCTCTTCACCCACCCCTTCTCCCTTGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCAGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTTGTCGTATTCCTCACCTCCGTCGGGGTGTGGATTGAAGAGATTTCATACTGTGTTTGTAGAGAGCGAGGTTGCGAATCACCTCAGATGAAAGAAGCCATCGACCATCAAAACTCGTTCCTCGTGCTTCAACCCGAGACCATGGAGAAGCTCCAGCGACAACACAATCAGGTACCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

271

Amino Acids

30.35

Weight (kDa)

7.71

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	122 - 222	2.3e-21	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	396
AccII	CGCG	3 cut(s)	318, 441, 447
AciI	CCGC	9 cut(s)	258, 261, 316, 349, 394, 439, 445, 525, 550
AclWI	GGATC	4 cut(s)	200, 261, 274, 305
AcsI	RAATTY	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	3 cut(s)	294, 376, 657
AgsI	TTSAA	4 cut(s)	129, 198, 671, 764
AjnI	CCWGG	4 cut(s)	279, 306, 374, 527
AluBI	AGCT	3 cut(s)	159, 385, 784
AluI	AGCT	3 cut(s)	159, 385, 784
Alw26I	GTCTC	2 cut(s)	490, 764
AlwI	GGATC	4 cut(s)	200, 261, 274, 305
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	7 cut(s)	282, 309, 355, 378, 514, 613, 622
ApoI	RAATTY	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	378, 613
AsuHPI	GGTGA	5 cut(s)	328, 472, 487, 640, 705
AvaI	CYCGRG	1 cut(s)	767
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	755
BbvCI	CCTCAGC	1 cut(s)	626
BccI	CCATC	5 cut(s)	49, 114, 278, 740, 747
BceAI	ACGGC	2 cut(s)	370, 446
BciT130I	CCWGG	4 cut(s)	281, 308, 376, 529
BcoDI	GTCTC	2 cut(s)	490, 764
BglI	GCCNNNNNGGC	2 cut(s)	308, 621
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	3 cut(s)	258, 261, 525
BlsI	GCNGC	3 cut(s)	259, 262, 526
Bme1390I	CCNGG	4 cut(s)	281, 308, 376, 529
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	378, 613
BmiI	GGNNCC	2 cut(s)	268, 807
BmrFI	CCNGG	4 cut(s)	281, 308, 376, 529
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	7 cut(s)	279, 293, 306, 374, 375, 511, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 376, 657
BseBI	CCWGG	4 cut(s)	281, 308, 376, 529
BseDI	CCNNGG	7 cut(s)	279, 293, 306, 374, 375, 511, 774
BseLI	CCNNNNNNNGG	3 cut(s)	294, 376, 657
BseMII	CTCAG	3 cut(s)	405, 640, 731
BseRI	GAGGAG	1 cut(s)	509
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	3 cut(s)	318, 441, 447
BshFI	GGCC	7 cut(s)	284, 311, 357, 380, 516, 615, 624
BshNI	GGYRCC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	215, 262
BslI	CCNNNNNNNGG	3 cut(s)	294, 376, 657
BsmAI	GTCTC	2 cut(s)	490, 764
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	2 cut(s)	215, 262
BsnI	GGCC	7 cut(s)	284, 311, 357, 380, 516, 615, 624
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	767
Bsp143I	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	9 cut(s)	258, 261, 316, 349, 394, 439, 445, 525, 550
BspANI	GGCC	7 cut(s)	284, 311, 357, 380, 516, 615, 624
BspCNI	CTCAG	3 cut(s)	406, 639, 730
BspFNI	CGCG	3 cut(s)	318, 441, 447
BspLI	GGNNCC	2 cut(s)	268, 807
BspPI	GGATC	4 cut(s)	200, 261, 274, 305
BspQI	GCTCTTC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	396
BssECI	CCNNGG	7 cut(s)	279, 293, 306, 374, 375, 511, 774
BssMI	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	2 cut(s)	511, 774
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	4 cut(s)	281, 308, 376, 529
Bst4CI	ACNGT	4 cut(s)	229, 346, 484, 686
Bst6I	CTCTTC	6 cut(s)	26, 365, 497, 539, 551, 666
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	414, 626, 717
BstDSI	CCRYGG	1 cut(s)	774
BstFNI	CGCG	3 cut(s)	318, 441, 447
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	6 cut(s)	171, 208, 240, 269, 300, 562
BstMAI	GTCTC	2 cut(s)	490, 764
BstMBI	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
BstMWI	GCNNNNNNNGC	5 cut(s)	308, 317, 386, 467, 621
BstNI	CCWGG	4 cut(s)	281, 308, 376, 529
BstSCI	CCNGG	4 cut(s)	279, 306, 374, 527
BstUI	CGCG	3 cut(s)	318, 441, 447
BstX2I	RGATCY	2 cut(s)	168, 266
BstYI	RGATCY	2 cut(s)	168, 266
BsuRI	GGCC	7 cut(s)	284, 311, 357, 380, 516, 615, 624
BtgI	CCRYGG	1 cut(s)	774
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	378, 613
CseI	GACGC	5 cut(s)	85, 430, 436, 437, 619
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	1 cut(s)	775
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	3 cut(s)	414, 626, 717
DpnI	GATC	6 cut(s)	170, 207, 239, 268, 299, 561
DpnII	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
Eam1104I	CTCTTC	6 cut(s)	26, 365, 497, 539, 551, 666
EarI	CTCTTC	6 cut(s)	26, 365, 497, 539, 551, 666
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	2 cut(s)	511, 774
Eco147I	AGGCCT	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	767
EcoRII	CCWGG	4 cut(s)	279, 306, 374, 527
EcoT14I	CCWWGG	2 cut(s)	511, 774
ErhI	CCWWGG	2 cut(s)	511, 774
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	1 cut(s)	778
FaiI	YATR	3 cut(s)	146, 682, 776
FaqI	GGGAC	2 cut(s)	215, 262
FatI	CATG	1 cut(s)	774
Fnu4HI	GCNGC	3 cut(s)	258, 261, 525
Fsp4HI	GCNGC	3 cut(s)	258, 261, 525
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	3 cut(s)	258, 261, 525
GsaI	CCCAGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	7 cut(s)	284, 311, 357, 380, 516, 615, 624
HgaI	GACGC	5 cut(s)	85, 430, 436, 437, 619
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	778
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	2 cut(s)	222, 451
HindII	GTYRAC	2 cut(s)	222, 451
HinfI	GANTC	5 cut(s)	5, 122, 275, 416, 710
HphI	GGTGA	5 cut(s)	328, 472, 487, 640, 705
Hpy166II	GTNNAC	2 cut(s)	222, 451
Hpy188I	TCNGA	6 cut(s)	121, 297, 427, 559, 595, 720
Hpy188III	TCNNGA	3 cut(s)	28, 166, 203
Hpy8I	GTNNAC	2 cut(s)	222, 451
Hpy99I	CGWCG	4 cut(s)	431, 467, 623, 659
HpyAV	CCTTC	6 cut(s)	123, 322, 331, 412, 430, 514
HpyCH4III	ACNGT	4 cut(s)	229, 346, 484, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	308, 317, 386, 467, 621
HpyF3I	CTNAG	3 cut(s)	414, 626, 717
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	1 cut(s)	778
HspAI	GCGC	1 cut(s)	318
KpnI	GGTACC	1 cut(s)	809
Kzo9I	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
LguI	GCTCTTC	1 cut(s)	539
LmnI	GCTCC	2 cut(s)	401, 789
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	6 cut(s)	170, 207, 239, 268, 299, 561
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
MflI	RGATCY	2 cut(s)	168, 266
MluCI	AATT	2 cut(s)	136, 192
MlyI	GAGTC	2 cut(s)	284, 425
MmeI	TCCRAC	3 cut(s)	388, 450, 618
MspR9I	CCNGG	4 cut(s)	281, 308, 376, 529
MvaI	CCWGG	4 cut(s)	281, 308, 376, 529
MvnI	CGCG	3 cut(s)	318, 441, 447
MwoI	GCNNNNNNNGC	5 cut(s)	308, 317, 386, 467, 621
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
NlaIII	CATG	1 cut(s)	778
NlaIV	GGNNCC	2 cut(s)	268, 807
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	478
PasI	CCCWGGG	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	122, 710
PflFI	GACNNNGTC	2 cut(s)	217, 344
PkrI	GCNGC	3 cut(s)	259, 262, 526
PleI	GAGTC	2 cut(s)	283, 424
PpsI	GAGTC	2 cut(s)	283, 424
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	4 cut(s)	279, 306, 374, 527
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	4 cut(s)	279, 306, 374, 527
PspN4I	GGNNCC	2 cut(s)	268, 807
PspPI	GGNCC	2 cut(s)	378, 613
PsuI	RGATCY	2 cut(s)	168, 266
PsyI	GACNNNGTC	2 cut(s)	217, 344
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
SapI	GCTCTTC	1 cut(s)	539
SatI	GCNGC	3 cut(s)	258, 261, 525
Sau3AI	GATC	6 cut(s)	168, 205, 237, 266, 297, 559
Sau96I	GGNCC	2 cut(s)	378, 613
SchI	GAGTC	2 cut(s)	284, 425
ScrFI	CCNGG	4 cut(s)	281, 308, 376, 529
SfiI	GGCCNNNNNGGCC	1 cut(s)	621
Sse9I	AATT	2 cut(s)	136, 192
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	9 cut(s)	258, 261, 316, 349, 394, 439, 445, 525, 550
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	4 cut(s)	279, 306, 374, 527
StyI	CCWWGG	2 cut(s)	511, 774
TaaI	ACNGT	4 cut(s)	229, 346, 484, 686
TaqI	TCGA	3 cut(s)	109, 273, 735
TasI	AATT	2 cut(s)	136, 192
TauI	GCSGC	3 cut(s)	260, 263, 527
TfiI	GAWTC	2 cut(s)	122, 710
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	313, 669, 737
TspGWI	ACGGA	1 cut(s)	643
Tth111I	GACNNNGTC	2 cut(s)	217, 344
XapI	RAATTY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.