Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

6378715 .. 6379988

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCAACCACCGTGCCACCCGTCCTCCCAATCTCCACCACCGTCGCCGCCGCCGGATCCGTCGAGTCCCAGGCCCAGCCTCCGATCGCCACCCCGGCCTTCCGCGCCTTCCTCAACCACATCACCGACACTGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTCGCCGACCGCTCCGCCTTCGCCAAACCGGAATCCTTCTCCGACGCCACCGTCCGCGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGTCGTCCTCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCTTCCGATCAGCCCCTCGTCATCTTCGGCCGGACCTTCTCCGACACCCAAACGCTACTCGGCCTCGTCGGCCTTAGCGTCTTCGTCGTCTTCCTCACATCCGTCGGATCCGTCCTCATCTCCGCTCTCATGGTCGGAGTCGGCGTTGTGCTCGTTCACGGTGCCATTAGGGTTCCTGAGGATCTCTTCTTGGATGAGCAAGATTCGTCTGCCTCCACCGGATTCCTATCATTCCTCAACGGCGCTGCATCCAATGTCGCCGCCGCCACCGCTCCTGCCATGGCCGCTGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

224

Amino Acids

23.66

Weight (kDa)

8.16

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	48 - 191	9.3e-52	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	533
AccBSI	CCGCTC	3 cut(s)	183, 497, 644
AccII	CGCG	4 cut(s)	105, 228, 255, 666
AclWI	GGATC	5 cut(s)	51, 64, 474, 487, 561
AcoI	YGGCCR	2 cut(s)	400, 654
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	69, 161, 347
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw21I	GWGCWC	2 cut(s)	174, 525
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	5 cut(s)	51, 64, 474, 487, 561
AoxI	GGCC	9 cut(s)	72, 96, 142, 165, 334, 400, 433, 442, 654
ApeKI	GCWGC	2 cut(s)	617, 659
AspLEI	GCGC	3 cut(s)	107, 156, 617
AspS9I	GGNCC	3 cut(s)	73, 165, 405
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	115, 295
AvaII	GGWCC	1 cut(s)	405
AxyI	CCTNAGG	1 cut(s)	549
BamHI	GGATCC	2 cut(s)	56, 479
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	445, 454
Bbv12I	GWGCWC	2 cut(s)	174, 525
BbvI	GCAGC	2 cut(s)	604, 646
BceAI	ACGGC	4 cut(s)	157, 254, 275, 628
BciT130I	CCWGG	3 cut(s)	71, 163, 349
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	298
BfoI	RGCGCY	2 cut(s)	157, 618
BglI	GCCNNNNNGGC	2 cut(s)	95, 441
BisI	GCNGC	9 cut(s)	48, 51, 157, 345, 618, 633, 636, 657, 660
BlsI	GCNGC	9 cut(s)	49, 52, 158, 346, 619, 634, 637, 658, 661
Bme1390I	CCNGG	4 cut(s)	71, 95, 163, 349
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	73, 165, 405
BmiI	GGNNCC	4 cut(s)	58, 481, 535, 546
BmrFI	CCNGG	4 cut(s)	71, 95, 163, 349
BmsI	GCATC	1 cut(s)	629
BpiI	GAAGAC	2 cut(s)	445, 454
Bpu10I	CCTNAGC	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	6 cut(s)	69, 93, 161, 162, 331, 651
BsaWI	WCCGGW	2 cut(s)	199, 590
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 131, 161, 299, 329, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	598
BseBI	CCWGG	3 cut(s)	71, 163, 349
BseDI	CCNNGG	6 cut(s)	69, 93, 161, 162, 331, 651
BseGI	GGATG	3 cut(s)	470, 571, 620
BseJI	GATNNNNATC	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	540
BseRI	GAGGAG	2 cut(s)	320, 329
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	604, 646
BseYI	CCCAGC	2 cut(s)	75, 150
Bsh1236I	CGCG	4 cut(s)	105, 228, 255, 666
Bsh1285I	CGRYCG	3 cut(s)	87, 181, 403
BshFI	GGCC	9 cut(s)	74, 98, 144, 167, 336, 402, 435, 444, 656
BshNI	GGYRCC	1 cut(s)	533
BsiEI	CGRYCG	3 cut(s)	87, 181, 403
BsiHKAI	GWGCWC	2 cut(s)	174, 525
BsiSI	CCGG	5 cut(s)	54, 95, 200, 403, 591
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	9 cut(s)	74, 98, 144, 167, 336, 402, 435, 444, 656
Bsp1286I	GDGCHC	2 cut(s)	174, 525
Bsp143I	GATC	5 cut(s)	56, 84, 379, 479, 553
Bsp19I	CCATGG	1 cut(s)	651
BspANI	GGCC	9 cut(s)	74, 98, 144, 167, 336, 402, 435, 444, 656
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	4 cut(s)	105, 228, 255, 666
BspLI	GGNNCC	4 cut(s)	58, 481, 535, 546
BspPI	GGATC	5 cut(s)	51, 64, 474, 487, 561
BspQI	GCTCTTC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	533
BsrBI	CCGCTC	3 cut(s)	183, 497, 644
BssECI	CCNNGG	6 cut(s)	69, 93, 161, 162, 331, 651
BssMI	GATC	5 cut(s)	56, 84, 379, 479, 553
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	3 cut(s)	71, 163, 349
Bst4CI	ACNGT	5 cut(s)	13, 43, 133, 223, 533
Bst6I	CTCTTC	4 cut(s)	305, 359, 371, 563
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	174, 664
BstDEI	CTNAG	2 cut(s)	446, 549
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	3 cut(s)	470, 571, 620
BstFNI	CGCG	4 cut(s)	105, 228, 255, 666
BstH2I	RGCGCY	2 cut(s)	157, 618
BstHHI	GCGC	3 cut(s)	107, 156, 617
BstKTI	GATC	5 cut(s)	59, 87, 382, 482, 556
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	5 cut(s)	56, 84, 379, 479, 553
BstMCI	CGRYCG	3 cut(s)	87, 181, 403
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 104, 173, 275, 441, 641, 656
BstNI	CCWGG	3 cut(s)	71, 163, 349
BstSCI	CCNGG	4 cut(s)	69, 93, 161, 347
BstUI	CGCG	4 cut(s)	105, 228, 255, 666
BstV1I	GCAGC	2 cut(s)	604, 646
BstV2I	GAAGAC	2 cut(s)	445, 454
BstX2I	RGATCY	3 cut(s)	56, 479, 553
BstYI	RGATCY	3 cut(s)	56, 479, 553
BstZI	CGGCCG	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	9 cut(s)	74, 98, 144, 167, 336, 402, 435, 444, 656
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	470, 571, 620
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	174, 664
CfoI	GCGC	3 cut(s)	107, 156, 617
Cfr13I	GGNCC	3 cut(s)	73, 165, 405
CseI	GACGC	4 cut(s)	217, 224, 244, 439
CviAII	CATG	2 cut(s)	502, 652
DdeI	CTNAG	2 cut(s)	446, 549
DpnI	GATC	5 cut(s)	58, 86, 381, 481, 555
DpnII	GATC	5 cut(s)	56, 84, 379, 479, 553
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	400, 654
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	4 cut(s)	305, 359, 371, 563
EarI	CTCTTC	4 cut(s)	305, 359, 371, 563
EciI	GGCGGA	2 cut(s)	175, 359
Ecl136II	GAGCTC	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	405
Eco52I	CGGCCG	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	69, 161, 347
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	2 cut(s)	505, 655
FaiI	YATR	2 cut(s)	503, 653
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	501, 651
Fnu4HI	GCNGC	9 cut(s)	48, 51, 157, 345, 618, 633, 636, 657, 660
FokI	GGATG	3 cut(s)	457, 578, 607
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	9 cut(s)	48, 51, 157, 345, 618, 633, 636, 657, 660
GlaI	GCGC	3 cut(s)	106, 155, 616
GluI	GCNGC	9 cut(s)	48, 51, 157, 345, 618, 633, 636, 657, 660
GsaI	CCCAGC	2 cut(s)	79, 154
HaeII	RGCGCY	2 cut(s)	157, 618
HaeIII	GGCC	9 cut(s)	74, 98, 144, 167, 336, 402, 435, 444, 656
HapII	CCGG	5 cut(s)	54, 95, 200, 403, 591
HgaI	GACGC	4 cut(s)	217, 224, 244, 439
HhaI	GCGC	3 cut(s)	107, 156, 617
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	505, 655
Hin6I	GCGC	3 cut(s)	105, 154, 615
HinP1I	GCGC	3 cut(s)	105, 154, 615
HincII	GTYRAC	2 cut(s)	6, 259
HindII	GTYRAC	2 cut(s)	6, 259
HinfI	GANTC	5 cut(s)	65, 203, 510, 575, 594
HpaII	CCGG	5 cut(s)	54, 95, 200, 403, 591
HphI	GGTGA	2 cut(s)	115, 295
Hpy166II	GTNNAC	3 cut(s)	6, 259, 529
Hpy188I	TCNGA	6 cut(s)	84, 214, 379, 415, 479, 509
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	3 cut(s)	6, 259, 529
HpyAV	CCTTC	7 cut(s)	109, 118, 199, 217, 322, 384, 418
HpyCH4III	ACNGT	5 cut(s)	13, 43, 133, 223, 533
HpyCH4V	TGCA	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 104, 173, 275, 441, 641, 656
HpyF3I	CTNAG	2 cut(s)	446, 549
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	505, 655
HspAI	GCGC	3 cut(s)	105, 154, 615
Kzo9I	GATC	5 cut(s)	56, 84, 379, 479, 553
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	188, 649
Lsp1109I	GCAGC	2 cut(s)	604, 646
LweI	GCATC	1 cut(s)	629
MalI	GATC	5 cut(s)	58, 86, 381, 481, 555
MbiI	CCGCTC	3 cut(s)	183, 497, 644
MboI	GATC	5 cut(s)	56, 84, 379, 479, 553
MboII	GAAGA	7 cut(s)	292, 346, 358, 388, 445, 454, 550
MflI	RGATCY	3 cut(s)	56, 479, 553
MhlI	GDGCHC	2 cut(s)	174, 525
MlyI	GAGTC	2 cut(s)	74, 519
MmeI	TCCRAC	4 cut(s)	237, 438, 457, 487
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	5 cut(s)	54, 95, 200, 403, 591
MspR9I	CCNGG	4 cut(s)	71, 95, 163, 349
MvaI	CCWGG	3 cut(s)	71, 163, 349
MvnI	CGCG	4 cut(s)	105, 228, 255, 666
MwoI	GCNNNNNNNGC	7 cut(s)	95, 104, 173, 275, 441, 641, 656
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	5 cut(s)	56, 84, 379, 479, 553
NlaIII	CATG	2 cut(s)	505, 655
NlaIV	GGNNCC	4 cut(s)	58, 481, 535, 546
NmeAIII	GCCGAG	3 cut(s)	193, 312, 411
PasI	CCCWGGG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 447, 513
PfeI	GAWTC	3 cut(s)	203, 575, 594
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	9 cut(s)	49, 52, 158, 346, 619, 634, 637, 658, 661
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	73, 518
PpsI	GAGTC	2 cut(s)	73, 518
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	69, 161, 347
PspFI	CCCAGC	2 cut(s)	75, 150
PspGI	CCWGG	3 cut(s)	69, 161, 347
PspN4I	GGNNCC	4 cut(s)	58, 481, 535, 546
PspPI	GGNCC	3 cut(s)	73, 165, 405
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	3 cut(s)	56, 479, 553
PsyI	GACNNNGTC	1 cut(s)	131
PvuI	CGATCG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	359
SatI	GCNGC	9 cut(s)	48, 51, 157, 345, 618, 633, 636, 657, 660
Sau3AI	GATC	5 cut(s)	56, 84, 379, 479, 553
Sau96I	GGNCC	3 cut(s)	73, 165, 405
SchI	GAGTC	2 cut(s)	74, 519
ScrFI	CCNGG	4 cut(s)	71, 95, 163, 349
SduI	GDGCHC	2 cut(s)	174, 525
SetI	ASST	4 cut(s)	174, 267, 366, 410
SfaNI	GCATC	1 cut(s)	629
SfiI	GGCCNNNNNGGCC	1 cut(s)	441
SinI	GGWCC	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	4 cut(s)	69, 93, 161, 347
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	5 cut(s)	13, 43, 133, 223, 533
TaqI	TCGA	1 cut(s)	63
TauI	GCSGC	7 cut(s)	50, 53, 159, 347, 635, 638, 659
TfiI	GAWTC	3 cut(s)	203, 575, 594
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	2 cut(s)	617, 659
TspGWI	ACGGA	3 cut(s)	49, 463, 472
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.