Rorug01G0391200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002183
Physical Location & Seq
Forward (+)
50172613 .. 50174405
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0391200.1

Sequence Viewer

Length: 342 bp
ATGACCACCCGCGAATCCTCCTCCGGACTCGACTCTTCGAGCATGGACGATCAACCCACCAAACGCACCGTTTCACTTGATCCGGAACCCGGCGGCGAGGTCTGGGTCGAAAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCCCTGATCCAGCAAGTCAACGACAACCACCAGTCCCGGATTCCGGCCAACATGGTCAAGAACGTCGCCCTCATCCAGGAAATCAACGCCAACATCCGCAAGGTCGTCTCGCTCTACTCCGACCTGTCCTCCGATTTCTCCACCGTCTTTCCCAACAAGGAGCGCTGCGAGCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

5.34

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 34 - 108 7.9e-37 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 12, 162
AccIII TCCGGA 2 cut(s) 23, 82
AciI CCGC 7 cut(s) 10, 93, 121, 130, 154, 160, 259
AclWI GGATC 2 cut(s) 74, 163
AcoI YGGCCR 1 cut(s) 207
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 89, 139, 205, 238
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 3 cut(s) 132, 138, 237
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 74, 163
Aor13HI TCCGGA 2 cut(s) 23, 82
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 2 cut(s) 141, 207
ApeKI GCWGC 2 cut(s) 123, 327
AspLEI GCGC 2 cut(s) 164, 327
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 90, 199
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 135, 314
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 3 cut(s) 134, 140, 239
BcnI CCSGG 2 cut(s) 90, 199
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 3 cut(s) 94, 124, 328
BlsI GCNGC 3 cut(s) 95, 125, 329
Bme1390I CCNGG 5 cut(s) 90, 134, 140, 199, 239
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 5 cut(s) 90, 134, 140, 199, 239
BpuMI CCSGG 2 cut(s) 90, 199
BsaWI WCCGGW 2 cut(s) 23, 82
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 139, 205, 238
Bse1I ACTGG 1 cut(s) 193
BseAI TCCGGA 2 cut(s) 23, 82
BseBI CCWGG 3 cut(s) 134, 140, 239
BseGI GGATG 2 cut(s) 234, 255
BseLI CCNNNNNNNGG 4 cut(s) 89, 139, 205, 238
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 135, 314
Bsh1236I CGCG 2 cut(s) 12, 162
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 143, 209
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 5 cut(s) 24, 83, 90, 199, 206
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 4 cut(s) 89, 139, 205, 238
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 2 cut(s) 143, 209
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 2 cut(s) 23, 82
Bsp143I GATC 3 cut(s) 49, 79, 168
BspACI CCGC 7 cut(s) 10, 93, 121, 130, 154, 160, 259
BspANI GGCC 2 cut(s) 143, 209
BspEI TCCGGA 2 cut(s) 23, 82
BspFNI CGCG 2 cut(s) 12, 162
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 2 cut(s) 74, 163
BsrI ACTGG 1 cut(s) 193
BssMI GATC 3 cut(s) 49, 79, 168
Bst2UI CCWGG 3 cut(s) 134, 140, 239
Bst4CI ACNGT 2 cut(s) 70, 307
Bst6I CTCTTC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 332
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 234, 255
BstFNI CGCG 2 cut(s) 12, 162
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 164, 327
BstKTI GATC 3 cut(s) 52, 82, 171
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 49, 79, 168
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 129, 331
BstNI CCWGG 3 cut(s) 134, 140, 239
BstSCI CCNGG 5 cut(s) 88, 132, 138, 197, 237
BstUI CGCG 2 cut(s) 12, 162
BstV1I GCAGC 2 cut(s) 135, 314
BsuRI GGCC 2 cut(s) 143, 209
BtsCI GGATG 2 cut(s) 234, 255
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 2 cut(s) 164, 327
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 2 cut(s) 43, 214
CviJI RGCY 4 cut(s) 126, 143, 209, 334
CviKI_1 RGCY 4 cut(s) 126, 143, 209, 334
DpnI GATC 3 cut(s) 51, 81, 170
DpnII GATC 3 cut(s) 49, 79, 168
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 132, 138, 237
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 2 cut(s) 46, 217
FaiI YATR 2 cut(s) 44, 215
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 42, 213
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 94, 124, 328
FokI GGATG 2 cut(s) 221, 242
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 94, 124, 328
FspBI CTAG 1 cut(s) 340
GlaI GCGC 2 cut(s) 163, 326
GluI GCNGC 3 cut(s) 94, 124, 328
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 143, 209
HapII CCGG 5 cut(s) 24, 83, 90, 199, 206
HhaI GCGC 2 cut(s) 164, 327
Hin1II CATG 2 cut(s) 46, 217
Hin6I GCGC 2 cut(s) 162, 325
HinP1I GCGC 2 cut(s) 162, 325
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 4 cut(s) 14, 27, 32, 202
HpaII CCGG 5 cut(s) 24, 83, 90, 199, 206
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 283, 295
Hpy188III TCNNGA 3 cut(s) 24, 83, 220
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 70, 307
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 331
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 46, 217
HspAI GCGC 2 cut(s) 162, 325
Kpn2I TCCGGA 2 cut(s) 23, 82
Kzo9I GATC 3 cut(s) 49, 79, 168
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 135, 314
MaeI CTAG 1 cut(s) 340
MaeII ACGT 1 cut(s) 225
MalI GATC 3 cut(s) 51, 81, 170
MboI GATC 3 cut(s) 49, 79, 168
MboII GAAGA 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 336
MlyI GAGTC 2 cut(s) 21, 26
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 28, 31, 91, 158, 242, 301
MroI TCCGGA 2 cut(s) 23, 82
MspI CCGG 5 cut(s) 24, 83, 90, 199, 206
MspR9I CCNGG 5 cut(s) 90, 134, 140, 199, 239
MvaI CCWGG 3 cut(s) 134, 140, 239
MvnI CGCG 2 cut(s) 12, 162
MwoI GCNNNNNNNGC 2 cut(s) 129, 331
NciI CCSGG 2 cut(s) 90, 199
NdeII GATC 3 cut(s) 49, 79, 168
NlaIII CATG 2 cut(s) 46, 217
NlaIV GGNNCC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 14, 202
PfoI TCCNGGA 2 cut(s) 197, 237
PkrI GCNGC 3 cut(s) 95, 125, 329
PleI GAGTC 2 cut(s) 21, 26
PpsI GAGTC 2 cut(s) 21, 26
Psp6I CCWGG 3 cut(s) 132, 138, 237
PspGI CCWGG 3 cut(s) 132, 138, 237
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 136
SatI GCNGC 3 cut(s) 94, 124, 328
Sau3AI GATC 3 cut(s) 49, 79, 168
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 21, 26
ScrFI CCNGG 5 cut(s) 90, 134, 140, 199, 239
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 102, 128, 138, 228, 267, 288
SinI GGWCC 1 cut(s) 136
SsiI CCGC 7 cut(s) 10, 93, 121, 130, 154, 160, 259
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 5 cut(s) 88, 132, 138, 197, 237
TaaI ACNGT 2 cut(s) 70, 307
TaiI ACGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 30, 38, 108, 150
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 2 cut(s) 14, 202
TseI GCWGC 2 cut(s) 123, 327
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 236
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.