Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

6548613 .. 6548990

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG037100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTCTGTCGCCGCCGCCGGATCCATTGAGTCCCAGGCCTCCCAACCTCGGATCACCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCATTCCGCTCCGCCTTCGCCAAGCCCGTGTCCTTCTCCGACACCACCCTCCGCGTCCGTAAGAACTACTCCTACTTCCTCGTCAACTACCTCGCCATCGTCGCCCTCATCGTCGTCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGACCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

10.25

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 122	1.3e-20	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	2 cut(s)	111, 234
AclWI	GGATC	3 cut(s)	54, 67, 98
AfiI	CCNNNNNNNGG	2 cut(s)	87, 169
AjnI	CCWGG	4 cut(s)	72, 99, 167, 341
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	54, 67, 98
AoxI	GGCC	4 cut(s)	75, 102, 148, 171
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	3 cut(s)	85, 121, 301
BamHI	GGATCC	1 cut(s)	59
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	4 cut(s)	74, 101, 169, 343
BcoDI	GTCTC	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	4 cut(s)	51, 54, 163, 339
BlsI	GCNGC	4 cut(s)	52, 55, 164, 340
Bme1390I	CCNGG	4 cut(s)	74, 101, 169, 343
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	74, 101, 169, 343
BsaJI	CCNNGG	5 cut(s)	72, 86, 99, 167, 168
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 137, 167, 305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 169
BseBI	CCWGG	4 cut(s)	74, 101, 169, 343
BseDI	CCNNGG	5 cut(s)	72, 86, 99, 167, 168
BseLI	CCNNNNNNNGG	2 cut(s)	87, 169
BseRI	GAGGAG	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	111, 234
BshFI	GGCC	4 cut(s)	77, 104, 150, 173
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	87, 169
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	77, 104, 150, 173
Bsp143I	GATC	3 cut(s)	30, 59, 90
BspANI	GGCC	4 cut(s)	77, 104, 150, 173
BspFNI	CGCG	2 cut(s)	111, 234
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	54, 67, 98
BspQI	GCTCTTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	189
BssECI	CCNNGG	5 cut(s)	72, 86, 99, 167, 168
BssMI	GATC	3 cut(s)	30, 59, 90
Bst2UI	CCWGG	4 cut(s)	74, 101, 169, 343
Bst4CI	ACNGT	2 cut(s)	13, 139
Bst6I	CTCTTC	3 cut(s)	311, 353, 365
BstC8I	GCNNGC	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	111, 234
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	3 cut(s)	33, 62, 93
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	30, 59, 90
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 179, 281
BstNI	CCWGG	4 cut(s)	74, 101, 169, 343
BstSCI	CCNGG	4 cut(s)	72, 99, 167, 341
BstUI	CGCG	2 cut(s)	111, 234
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	77, 104, 150, 173
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	113, 162
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	223
CviJI	RGCY	7 cut(s)	77, 104, 150, 173, 178, 205, 346
CviKI_1	RGCY	7 cut(s)	77, 104, 150, 173, 178, 205, 346
DpnI	GATC	3 cut(s)	32, 61, 92
DpnII	GATC	3 cut(s)	30, 59, 90
Eam1104I	CTCTTC	3 cut(s)	311, 353, 365
EarI	CTCTTC	3 cut(s)	311, 353, 365
EciI	GGCGGA	2 cut(s)	181, 353
Eco147I	AGGCCT	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	72, 99, 167, 341
Esp3I	CGTCTC	1 cut(s)	304
FaqI	GGGAC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	51, 54, 163, 339
Fsp4HI	GCNGC	4 cut(s)	51, 54, 163, 339
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	4 cut(s)	51, 54, 163, 339
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	4 cut(s)	77, 104, 150, 173
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	2 cut(s)	113, 162
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	3 cut(s)	85, 121, 301
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	3 cut(s)	90, 220, 373
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 265
Hpy99I	CGWCG	3 cut(s)	284, 296, 299
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 328
HpyCH4III	ACNGT	2 cut(s)	13, 139
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 179, 281
HspAI	GCGC	2 cut(s)	111, 160
Kzo9I	GATC	3 cut(s)	30, 59, 90
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	194
MalI	GATC	3 cut(s)	32, 61, 92
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	3 cut(s)	30, 59, 90
MboII	GAAGA	3 cut(s)	298, 340, 352
MflI	RGATCY	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	243
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	4 cut(s)	74, 101, 169, 343
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	4 cut(s)	74, 101, 169, 343
MvnI	CGCG	2 cut(s)	111, 234
MwoI	GCNNNNNNNGC	3 cut(s)	110, 179, 281
NdeII	GATC	3 cut(s)	30, 59, 90
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	199
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 288
PctI	GAATGC	1 cut(s)	182
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 55, 164, 340
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	4 cut(s)	72, 99, 167, 341
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	4 cut(s)	72, 99, 167, 341
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	171
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	353
SatI	GCNGC	4 cut(s)	51, 54, 163, 339
Sau3AI	GATC	3 cut(s)	30, 59, 90
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	4 cut(s)	74, 101, 169, 343
SetI	ASST	6 cut(s)	44, 88, 180, 273, 333, 360
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	72, 99, 167, 341
TaaI	ACNGT	2 cut(s)	13, 139
TaqI	TCGA	1 cut(s)	327
TauI	GCSGC	4 cut(s)	53, 56, 165, 341
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	227
Tth111I	GACNNNGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.