Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

9601941 .. 9602939

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCACTCTTGCAAAACCCTCTCCAAATTCGACCGTTGATTCGCTACCCATTTCAAAACTGCCCCAACTCTCTCCAACCCGCCACCCCAAACCTCCATTTCCGTCCCAAAACACCTCCAAAGCCAATCCATTTCCACCCATCAACACCCAAATGCCAGCAGACCCATCGTTCCAGCCCCCAACCCAAAACCCAGGACGACGGCATCCCCGCCGAGGATGTCAAAATCCTCGCCAAGTTCAAGTCCAGGTACAATTACATCCGTGTCCTCGAAGTTTCCCGGAGAGCCGACCACCCTTTCGCCGGCTCAAGGCTTCTCCTTCTAGACGTCCCCGGAAACATCCACAGCATCTCTTATATCTTCAAGAACCTCACCAACACTTATTTCGACGTTTTCGCCACCTTCCCGCCCATTTTGCCTCCCGGACCCCTCGCAATTCTCGGGTTTGGGGCTGGTACGGCCGCCCGGTCCATTCTGGAGCTGTACCCGCAAGGGGTGGTTCATGGGTGGGAGATTGACCCAACTGTGGTTGCTGTGGCAAGAGAGTACTTTGGCCTTTCGAAGCTCGAAAGGCAGTTCCCAGATAGGCTTGTAATCCACATCGGAGACGCATTTAAAGCCTCGTCGAAAGATGGGTTTGCCGGAATTTTGGTGGATTTGTTTGCCCAAGGGAGTTTGGTCCCGGAGCTTCAAGACCCAAATACTTGGGAGATGCTCACCAGGTGTTTGAGAAAAGGCGGGAGAGTAATGGTCAATGTGGGAGGCAGTTGTGTGGAGGCTGAGGACTCGCAGAAAGATGGGAAAGTAGTTATGCAAGACACTTTGAAGGCTATGCATCAGGTTTTCGGTGACAAGCTCTTTGTATTGAGCCTTGGGAATCGGCAGGAAGATAGTTCGATTGCTCTTACTGGTGATGTGCCTGATGTTGAGGCTTGGAAGAAGGCGCTGCCGCCTTCTCTAGCTGGTTATGTCGATATGTGGAAGCCATTCAGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

332

Amino Acids

36.82

Weight (kDa)

8.78

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	992
AciI	CCGC	7 cut(s)	81, 210, 407, 462, 488, 738, 950
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	2 cut(s)	27, 645
AcyI	GRCGYC	1 cut(s)	327
AdeI	CACNNNGTG	1 cut(s)	723
AfaI	GTAC	4 cut(s)	251, 457, 485, 548
AfiI	CCNNNNNNNGG	6 cut(s)	214, 302, 309, 493, 526, 992
AgsI	TTSAA	5 cut(s)	56, 241, 364, 692, 826
AjnI	CCWGG	3 cut(s)	192, 245, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	481, 565, 688, 856, 962
AluI	AGCT	5 cut(s)	481, 565, 688, 856, 962
Alw26I	GTCTC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	459, 553
ApeKI	GCWGC	1 cut(s)	946
ApoI	RAATTY	2 cut(s)	27, 645
ArsI	GACNNNNNNTTYG	6 cut(s)	24, 56, 281, 313, 842, 874
Asp700I	GAANNNNTTC	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	3 cut(s)	425, 468, 679
AsuC2I	CCSGG	5 cut(s)	280, 333, 423, 466, 683
AsuHPI	GGTGA	4 cut(s)	364, 709, 860, 923
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	425, 468, 679
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	933
BccI	CCATC	4 cut(s)	148, 174, 626, 791
BceAI	ACGGC	2 cut(s)	217, 474
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	3 cut(s)	194, 247, 721
BcnI	CCSGG	5 cut(s)	280, 333, 423, 466, 683
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	2 cut(s)	323, 959
BfoI	RGCGCY	1 cut(s)	947
BisI	GCNGC	3 cut(s)	462, 947, 950
BlsI	GCNGC	3 cut(s)	463, 948, 951
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	8 cut(s)	194, 247, 280, 333, 423, 466, 683, 721
Bme18I	GGWCC	3 cut(s)	425, 468, 679
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	425, 468, 679
BmiI	GGNNCC	2 cut(s)	427, 681
BmrFI	CCNGG	8 cut(s)	194, 247, 280, 333, 423, 466, 683, 721
BmsI	GCATC	4 cut(s)	213, 357, 702, 844
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	5 cut(s)	280, 333, 423, 466, 683
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	5 cut(s)	192, 213, 331, 667, 871
Bsc4I	CCNNNNNNNGG	6 cut(s)	214, 302, 309, 493, 526, 992
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	913
BseBI	CCWGG	3 cut(s)	194, 247, 721
BseDI	CCNNGG	5 cut(s)	192, 213, 331, 667, 871
BseGI	GGATG	4 cut(s)	204, 223, 258, 339
BseLI	CCNNNNNNNGG	6 cut(s)	214, 302, 309, 493, 526, 992
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	1 cut(s)	913
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	933
Bsh1285I	CGRYCG	2 cut(s)	35, 462
BshFI	GGCC	2 cut(s)	461, 555
BsiEI	CGRYCG	2 cut(s)	35, 462
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	7 cut(s)	280, 303, 333, 423, 466, 642, 683
BslFI	GGGAC	3 cut(s)	90, 314, 665
BslI	CCNNNNNNNGG	6 cut(s)	214, 302, 309, 493, 526, 992
BsmAI	GTCTC	1 cut(s)	600
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	3 cut(s)	90, 314, 665
BsnI	GGCC	2 cut(s)	461, 555
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	560
BspACI	CCGC	7 cut(s)	81, 210, 407, 462, 488, 738, 950
BspANI	GGCC	2 cut(s)	461, 555
BspCNI	CTCAG	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	427, 681
BspT104I	TTCGAA	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	913
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	5 cut(s)	192, 213, 331, 667, 871
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	667, 871
Bst2UI	CCWGG	3 cut(s)	194, 247, 721
Bst4CI	ACNGT	2 cut(s)	36, 526
BstACI	GRCGYC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	158, 304
BstDEI	CTNAG	1 cut(s)	780
BstF5I	GGATG	4 cut(s)	204, 223, 258, 339
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstMAI	GTCTC	1 cut(s)	600
BstMCI	CGRYCG	2 cut(s)	35, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	415, 458, 487, 571, 617
BstNI	CCWGG	3 cut(s)	194, 247, 721
BstSCI	CCNGG	8 cut(s)	192, 245, 278, 331, 421, 464, 681, 719
BstV1I	GCAGC	1 cut(s)	933
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	461, 555
BtsCI	GGATG	4 cut(s)	204, 223, 258, 339
BtsIMutI	CAGTG	1 cut(s)	997
Cac8I	GCNNGC	2 cut(s)	158, 304
CfoI	GCGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	425, 468, 679
CseI	GACGC	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	719
Csp6I	GTAC	4 cut(s)	250, 456, 484, 547
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	4 cut(s)	250, 456, 484, 547
DdeI	CTNAG	1 cut(s)	780
DraI	TTTAAA	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	723
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
EclXI	CGGCCG	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	667, 871
Eco47I	GGWCC	3 cut(s)	425, 468, 679
Eco52I	CGGCCG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	192, 245, 719
EcoT14I	CCWWGG	2 cut(s)	667, 871
EcoT22I	ATGCAT	1 cut(s)	837
ErhI	CCWWGG	2 cut(s)	667, 871
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	1 cut(s)	506
FaiI	YATR	6 cut(s)	357, 504, 812, 833, 969, 977
FaqI	GGGAC	3 cut(s)	90, 314, 665
FatI	CATG	1 cut(s)	502
FauI	CCCGC	5 cut(s)	88, 217, 414, 495, 731
Fnu4HI	GCNGC	3 cut(s)	462, 947, 950
FokI	GGATG	4 cut(s)	191, 230, 245, 326
Fsp4HI	GCNGC	3 cut(s)	462, 947, 950
FspBI	CTAG	2 cut(s)	323, 959
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	3 cut(s)	462, 947, 950
GsuI	CTGGAG	1 cut(s)	497
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	461, 555
HapII	CCGG	7 cut(s)	280, 303, 333, 423, 466, 642, 683
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	946
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HinfI	GANTC	3 cut(s)	40, 785, 877
HpaII	CCGG	7 cut(s)	280, 303, 333, 423, 466, 642, 683
HphI	GGTGA	4 cut(s)	364, 709, 860, 923
Hpy188I	TCNGA	1 cut(s)	605
Hpy188III	TCNNGA	4 cut(s)	323, 364, 476, 692
Hpy99I	CGWCG	3 cut(s)	203, 392, 628
HpyAV	CCTTC	5 cut(s)	329, 412, 820, 934, 963
HpyCH4III	ACNGT	2 cut(s)	36, 526
HpyCH4IV	ACGT	2 cut(s)	327, 390
HpyCH4V	TGCA	3 cut(s)	13, 814, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	415, 458, 487, 571, 617
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	2 cut(s)	327, 390
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	1 cut(s)	944
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	478, 685
Lsp1109I	GCAGC	1 cut(s)	933
LweI	GCATC	4 cut(s)	213, 357, 702, 844
MabI	ACCWGGT	1 cut(s)	719
MaeI	CTAG	2 cut(s)	323, 959
MaeII	ACGT	2 cut(s)	327, 390
MaeIII	GTNAC	2 cut(s)	3, 848
MboII	GAAGA	3 cut(s)	352, 899, 949
MluCI	AATT	4 cut(s)	27, 253, 435, 645
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	837
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	986
MseI	TTAA	2 cut(s)	615, 997
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	7 cut(s)	280, 303, 333, 423, 466, 642, 683
MspR9I	CCNGG	8 cut(s)	194, 247, 280, 333, 423, 466, 683, 721
MvaI	CCWGG	3 cut(s)	194, 247, 721
MwoI	GCNNNNNNNGC	5 cut(s)	415, 458, 487, 571, 617
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	5 cut(s)	280, 333, 423, 466, 683
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	2 cut(s)	427, 681
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	3, 848
NsiI	ATGCAT	1 cut(s)	837
NspV	TTCGAA	1 cut(s)	560
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	2 cut(s)	40, 877
PflMI	CCANNNNNTGG	1 cut(s)	992
PfoI	TCCNGGA	3 cut(s)	278, 421, 681
PkrI	GCNGC	3 cut(s)	463, 948, 951
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Psp6I	CCWGG	3 cut(s)	192, 245, 719
PspGI	CCWGG	3 cut(s)	192, 245, 719
PspN4I	GGNNCC	2 cut(s)	427, 681
PspPI	GGNCC	3 cut(s)	425, 468, 679
RsaI	GTAC	4 cut(s)	251, 457, 485, 548
RsaNI	GTAC	4 cut(s)	250, 456, 484, 547
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	615, 997
SatI	GCNGC	3 cut(s)	462, 947, 950
Sau96I	GGNCC	3 cut(s)	425, 468, 679
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	8 cut(s)	194, 247, 280, 333, 423, 466, 683, 721
SexAI	ACCWGGT	1 cut(s)	719
SfaNI	GCATC	4 cut(s)	213, 357, 702, 844
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	3 cut(s)	425, 468, 679
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	27, 253, 435, 645
SsiI	CCGC	7 cut(s)	81, 210, 407, 462, 488, 738, 950
SspMI	CTAG	2 cut(s)	323, 959
StyD4I	CCNGG	8 cut(s)	192, 245, 278, 331, 421, 464, 681, 719
StyI	CCWWGG	2 cut(s)	667, 871
TaaI	ACNGT	2 cut(s)	36, 526
TaiI	ACGT	2 cut(s)	330, 393
TaqI	TCGA	8 cut(s)	31, 270, 387, 560, 567, 626, 896, 972
TasI	AATT	4 cut(s)	27, 253, 435, 645
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	464, 952
TfiI	GAWTC	2 cut(s)	40, 877
Tru1I	TTAA	2 cut(s)	615, 997
Tru9I	TTAA	2 cut(s)	615, 997
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	2 cut(s)	3, 848
TseI	GCWGC	1 cut(s)	946
Tsp45I	GTSAC	2 cut(s)	3, 848
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	2 cut(s)	92, 251
TspRI	CASTG	1 cut(s)	997
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	3 cut(s)	425, 468, 679
XapI	RAATTY	2 cut(s)	27, 645
XbaI	TCTAGA	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	2 cut(s)	323, 959
ZraI	GACGTC	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.