Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

19237553 .. 19238236

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCGACTCCGACAGCCCCGCCGATCCTCCCGGTATCCACAACCGCAACAGCCACTGCCACCGGCGGAGGGACGGCTCAGTCCCAGGCCCCGATCGCTACCCCGGCCTTCCGCGCATTCATCAACAACATCTGCGACACCTGCCGCAACGGCCTCGCCCAGCGCCGCCCCTGGTCCGAGCTCCTCGACCGATCTGCCTTCTCCAAGCCGGAATCGTTCTCCGACGCCACCGTCCGCGTCCGTAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGTCCTCGCCCTCACCGTCGCCGTCTCCCTCGTCACCCACCCGTTCTCCCTCTTCGTCCTCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCTCTCGTCATCTTCGGCCGCACATACTCCGACACCCAGACCCTCTGGGGCCTCATCGCCCTCTCCGTCTTCGTCGTCTTCCTCACATCCGTCGGATCCGTCCTCATCTCCGCTCTTGCCATCGGTGTTGCAGTTGTCTTCGCTCACGGCGCCTTTAGAGTTCCGGAGGACCTCTTCCTCGACGAGCAAGAGCCTTCCGCCTCCACTGGCTTCCTTTCCTTCCTCAACAACGCCGCATCCAATGTCGCTGTTGCCACATCCCCAGCCGTCGTCGCCGCCGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

228

Amino Acids

24.17

Weight (kDa)

8.71

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	51 - 194	1.4e-52	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
AasI	GACNNNNNNGTC	2 cut(s)	79, 230
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	542
AccBSI	CCGCTC	2 cut(s)	506, 674
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	4 cut(s)	114, 237, 264, 678
AccIII	TCCGGA	1 cut(s)	556
AclWI	GGATC	3 cut(s)	19, 483, 496
AcoI	YGGCCR	1 cut(s)	409
AcyI	GRCGYC	2 cut(s)	225, 543
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjnI	CCWGG	3 cut(s)	84, 170, 356
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	19, 483, 496
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	6 cut(s)	87, 105, 151, 343, 409, 442
AspLEI	GCGC	3 cut(s)	116, 165, 545
AspS9I	GGNCC	4 cut(s)	88, 174, 442, 562
AsuC2I	CCSGG	2 cut(s)	32, 104
AsuHPI	GGTGA	2 cut(s)	283, 304
AvaII	GGWCC	2 cut(s)	174, 562
BamHI	GGATCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	3 cut(s)	454, 463, 523
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	6 cut(s)	90, 166, 263, 284, 556, 644
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 176, 210
BciT130I	CCWGG	3 cut(s)	86, 172, 358
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	32, 104
BcoDI	GTCTC	1 cut(s)	307
BfoI	RGCGCY	2 cut(s)	166, 546
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	7 cut(s)	145, 166, 354, 412, 627, 669, 672
BlsI	GCNGC	7 cut(s)	146, 167, 355, 413, 628, 670, 673
Bme1390I	CCNGG	5 cut(s)	32, 86, 104, 172, 358
Bme18I	GGWCC	2 cut(s)	174, 562
BmgT120I	GGNCC	4 cut(s)	88, 174, 442, 562
BmiI	GGNNCC	4 cut(s)	90, 443, 490, 544
BmrFI	CCNGG	5 cut(s)	32, 86, 104, 172, 358
BmsI	GCATC	1 cut(s)	638
BpiI	GAAGAC	3 cut(s)	454, 463, 523
BpuMI	CCSGG	2 cut(s)	32, 104
BsaHI	GRCGYC	2 cut(s)	225, 543
BsaJI	CCNNGG	4 cut(s)	84, 102, 170, 340
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	604
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	86, 172, 358
BseDI	CCNNGG	4 cut(s)	84, 102, 170, 340
BseGI	GGATG	3 cut(s)	479, 629, 650
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	3 cut(s)	173, 329, 338
BseX3I	CGGCCG	1 cut(s)	409
BseYI	CCCAGC	2 cut(s)	159, 655
Bsh1236I	CGCG	4 cut(s)	114, 237, 264, 678
Bsh1285I	CGRYCG	3 cut(s)	96, 190, 412
BshFI	GGCC	6 cut(s)	89, 107, 153, 345, 411, 444
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	3 cut(s)	96, 190, 412
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	5 cut(s)	32, 63, 104, 209, 557
BslFI	GGGAC	2 cut(s)	67, 85
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	67, 85
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	89, 107, 153, 345, 411, 444
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	24, 93, 191, 388, 488
BspANI	GGCC	6 cut(s)	89, 107, 153, 345, 411, 444
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	4 cut(s)	114, 237, 264, 678
BspLI	GGNNCC	4 cut(s)	90, 443, 490, 544
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	3 cut(s)	19, 483, 496
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	542
BsrBI	CCGCTC	2 cut(s)	506, 674
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	84, 102, 170, 340
BssMI	GATC	5 cut(s)	24, 93, 191, 388, 488
BssNI	GRCGYC	2 cut(s)	225, 543
Bst2UI	CCWGG	3 cut(s)	86, 172, 358
Bst4CI	ACNGT	2 cut(s)	232, 295
Bst6I	CTCTTC	4 cut(s)	335, 368, 380, 572
BstACI	GRCGYC	2 cut(s)	225, 543
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	479, 629, 650
BstFNI	CGCG	4 cut(s)	114, 237, 264, 678
BstH2I	RGCGCY	2 cut(s)	166, 546
BstHHI	GCGC	3 cut(s)	116, 165, 545
BstKTI	GATC	5 cut(s)	27, 96, 194, 391, 491
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	5 cut(s)	24, 93, 191, 388, 488
BstMCI	CGRYCG	3 cut(s)	96, 190, 412
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 104, 113, 141, 150, 284, 542, 665
BstNI	CCWGG	3 cut(s)	86, 172, 358
BstSCI	CCNGG	5 cut(s)	30, 84, 102, 170, 356
BstUI	CGCG	4 cut(s)	114, 237, 264, 678
BstV2I	GAAGAC	3 cut(s)	454, 463, 523
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BstZI	CGGCCG	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	89, 107, 153, 345, 411, 444
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	479, 629, 650
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 597
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	3 cut(s)	116, 165, 545
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	4 cut(s)	88, 174, 442, 562
CseI	GACGC	3 cut(s)	226, 233, 253
DdeI	CTNAG	1 cut(s)	78
DinI	GGCGCC	1 cut(s)	544
DpnI	GATC	5 cut(s)	26, 95, 193, 390, 490
DpnII	GATC	5 cut(s)	24, 93, 191, 388, 488
DrdI	GACNNNNNNGTC	2 cut(s)	79, 230
DseDI	GACNNNNNNGTC	2 cut(s)	79, 230
EaeI	YGGCCR	1 cut(s)	409
EagI	CGGCCG	1 cut(s)	409
Eam1104I	CTCTTC	4 cut(s)	335, 368, 380, 572
EarI	CTCTTC	4 cut(s)	335, 368, 380, 572
EciI	GGCGGA	3 cut(s)	81, 368, 580
Ecl136II	GAGCTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	174, 562
Eco52I	CGGCCG	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	3 cut(s)	88, 442, 562
EcoRII	CCWGG	3 cut(s)	84, 170, 356
EcoT38I	GRGCYC	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	544
EheI	GGCGCC	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	307
FaiI	YATR	1 cut(s)	418
FaqI	GGGAC	2 cut(s)	67, 85
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	7 cut(s)	145, 166, 354, 412, 627, 669, 672
FokI	GGATG	3 cut(s)	466, 616, 637
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	7 cut(s)	145, 166, 354, 412, 627, 669, 672
GlaI	GCGC	3 cut(s)	115, 164, 544
GluI	GCNGC	7 cut(s)	145, 166, 354, 412, 627, 669, 672
GsaI	CCCAGC	2 cut(s)	163, 659
HaeII	RGCGCY	2 cut(s)	166, 546
HaeIII	GGCC	6 cut(s)	89, 107, 153, 345, 411, 444
HapII	CCGG	5 cut(s)	32, 63, 104, 209, 557
HgaI	GACGC	3 cut(s)	226, 233, 253
HhaI	GCGC	3 cut(s)	116, 165, 545
Hin1I	GRCGYC	2 cut(s)	225, 543
Hin6I	GCGC	3 cut(s)	114, 163, 543
HinP1I	GCGC	3 cut(s)	114, 163, 543
HincII	GTYRAC	2 cut(s)	6, 268
HindII	GTYRAC	2 cut(s)	6, 268
HinfI	GANTC	2 cut(s)	7, 212
HpaII	CCGG	5 cut(s)	32, 63, 104, 209, 557
HphI	GGTGA	2 cut(s)	283, 304
Hpy166II	GTNNAC	2 cut(s)	6, 268
Hpy188I	TCNGA	6 cut(s)	12, 178, 223, 388, 424, 488
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	2 cut(s)	6, 268
Hpy99I	CGWCG	7 cut(s)	227, 299, 470, 488, 578, 665, 668
HpyAV	CCTTC	4 cut(s)	118, 208, 597, 622
HpyCH4III	ACNGT	2 cut(s)	232, 295
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 104, 113, 141, 150, 284, 542, 665
HpyF3I	CTNAG	1 cut(s)	78
Hsp92I	GRCGYC	2 cut(s)	225, 543
HspAI	GCGC	3 cut(s)	114, 163, 543
KasI	GGCGCC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	24, 93, 191, 388, 488
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	186
LweI	GCATC	1 cut(s)	638
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	26, 95, 193, 390, 490
MbiI	CCGCTC	2 cut(s)	506, 674
MboI	GATC	5 cut(s)	24, 93, 191, 388, 488
MboII	GAAGA	8 cut(s)	322, 355, 367, 397, 454, 463, 523, 559
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	543
MmeI	TCCRAC	4 cut(s)	35, 246, 447, 466
MroI	TCCGGA	1 cut(s)	556
MspI	CCGG	5 cut(s)	32, 63, 104, 209, 557
MspR9I	CCNGG	5 cut(s)	32, 86, 104, 172, 358
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	3 cut(s)	86, 172, 358
MvnI	CGCG	4 cut(s)	114, 237, 264, 678
MwoI	GCNNNNNNNGC	8 cut(s)	95, 104, 113, 141, 150, 284, 542, 665
NarI	GGCGCC	1 cut(s)	543
NciI	CCSGG	2 cut(s)	32, 104
NdeII	GATC	5 cut(s)	24, 93, 191, 388, 488
NlaIV	GGNNCC	4 cut(s)	90, 443, 490, 544
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 456
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	146, 167, 355, 413, 628, 670, 673
Ple19I	CGATCG	1 cut(s)	96
PluTI	GGCGCC	1 cut(s)	546
PpuMI	RGGWCCY	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	3 cut(s)	84, 170, 356
PspFI	CCCAGC	2 cut(s)	159, 655
PspGI	CCWGG	3 cut(s)	84, 170, 356
PspN4I	GGNNCC	4 cut(s)	90, 443, 490, 544
PspPI	GGNCC	4 cut(s)	88, 174, 442, 562
PspPPI	RGGWCCY	1 cut(s)	562
PsrI	GAACNNNNNNTAC	2 cut(s)	239, 271
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	488
PvuI	CGATCG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	368
SatI	GCNGC	7 cut(s)	145, 166, 354, 412, 627, 669, 672
Sau3AI	GATC	5 cut(s)	24, 93, 191, 388, 488
Sau96I	GGNCC	4 cut(s)	88, 174, 442, 562
ScrFI	CCNGG	5 cut(s)	32, 86, 104, 172, 358
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	143, 183, 276, 375, 567
SfaNI	GCATC	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	544
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	2 cut(s)	174, 562
SspDI	GGCGCC	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	5 cut(s)	30, 84, 102, 170, 356
TaaI	ACNGT	2 cut(s)	232, 295
TaqI	TCGA	3 cut(s)	5, 186, 573
TaqII	GACCGA	1 cut(s)	204
TauI	GCSGC	7 cut(s)	147, 168, 356, 414, 629, 671, 674
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	61, 604
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	4 cut(s)	230, 448, 472, 481
TspRI	CASTG	2 cut(s)	61, 604
VpaK11BI	GGWCC	2 cut(s)	174, 562
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.