Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

65362433 .. 65362885

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCAACCACCGTCCTCCCAATCTCCACCACCTTTGTCGCCGCCACCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCCCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCATCGACACCGTCCGCAACGGACTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCTGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCTGCGTCCGCGTCAACTACCTCGCCGTCCTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCAGACTTTCTCCGATACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGGTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

150

Amino Acids

16.34

Weight (kDa)

7.85

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	47 - 149	2.8e-22	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	180
AccII	CGCG	2 cut(s)	102, 231
AciI	CCGC	8 cut(s)	42, 100, 133, 154, 178, 229, 309, 334
AclWI	GGATC	4 cut(s)	45, 58, 76, 89
AcoI	YGGCCR	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	78, 91, 160, 441
AjnI	CCWGG	4 cut(s)	63, 90, 158, 311
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	4 cut(s)	45, 58, 76, 89
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	7 cut(s)	66, 93, 162, 298, 364, 397, 406
AspLEI	GCGC	2 cut(s)	104, 153
AspS9I	GGNCC	2 cut(s)	162, 397
AsuHPI	GGTGA	2 cut(s)	271, 424
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	2 cut(s)	50, 81
BbsI	GAAGAC	2 cut(s)	409, 418
BbvCI	CCTCAGC	1 cut(s)	410
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	230, 251
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	4 cut(s)	65, 92, 160, 313
BcoDI	GTCTC	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	3 cut(s)	42, 154, 309
BlsI	GCNGC	3 cut(s)	43, 155, 310
Bme1390I	CCNGG	4 cut(s)	65, 92, 160, 313
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	162, 397
BmiI	GGNNCC	2 cut(s)	52, 83
BmrFI	CCNGG	4 cut(s)	65, 92, 160, 313
BpiI	GAAGAC	2 cut(s)	409, 418
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	6 cut(s)	63, 77, 90, 158, 159, 295
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 91, 160, 441
BseBI	CCWGG	4 cut(s)	65, 92, 160, 313
BseDI	CCNNGG	6 cut(s)	63, 77, 90, 158, 159, 295
BseLI	CCNNNNNNNGG	4 cut(s)	78, 91, 160, 441
BseMII	CTCAG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	293
BseYI	CCCAGC	2 cut(s)	72, 147
Bsh1236I	CGCG	2 cut(s)	102, 231
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	7 cut(s)	68, 95, 164, 300, 366, 399, 408
BsiEI	CGRYCG	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	4 cut(s)	78, 91, 160, 441
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	7 cut(s)	68, 95, 164, 300, 366, 399, 408
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	50, 81, 343
BspACI	CCGC	8 cut(s)	42, 100, 133, 154, 178, 229, 309, 334
BspANI	GGCC	7 cut(s)	68, 95, 164, 300, 366, 399, 408
BspCNI	CTCAG	1 cut(s)	423
BspFNI	CGCG	2 cut(s)	102, 231
BspLI	GGNNCC	2 cut(s)	52, 83
BspPI	GGATC	4 cut(s)	45, 58, 76, 89
BspQI	GCTCTTC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	180
BssECI	CCNNGG	6 cut(s)	63, 77, 90, 158, 159, 295
BssMI	GATC	3 cut(s)	50, 81, 343
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	4 cut(s)	65, 92, 160, 313
Bst4CI	ACNGT	2 cut(s)	13, 130
Bst6I	CTCTTC	3 cut(s)	281, 323, 335
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	410
BstFNI	CGCG	2 cut(s)	102, 231
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	104, 153
BstKTI	GATC	3 cut(s)	53, 84, 346
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	50, 81, 343
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 170, 251, 405
BstNI	CCWGG	4 cut(s)	65, 92, 160, 313
BstSCI	CCNGG	4 cut(s)	63, 90, 158, 311
BstUI	CGCG	2 cut(s)	102, 231
BstV2I	GAAGAC	2 cut(s)	409, 418
BstX2I	RGATCY	2 cut(s)	50, 81
BstYI	RGATCY	2 cut(s)	50, 81
BsuRI	GGCC	7 cut(s)	68, 95, 164, 300, 366, 399, 408
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	104, 153
Cfr13I	GGNCC	2 cut(s)	162, 397
CseI	GACGC	4 cut(s)	214, 220, 221, 403
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	52, 83, 345
DpnII	GATC	3 cut(s)	50, 81, 343
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	281, 323, 335
EarI	CTCTTC	3 cut(s)	281, 323, 335
EciI	GGCGGA	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	4 cut(s)	63, 90, 158, 311
Esp3I	CGTCTC	1 cut(s)	274
FaqI	GGGAC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	42, 154, 309
Fsp4HI	GCNGC	3 cut(s)	42, 154, 309
GlaI	GCGC	2 cut(s)	103, 152
GluI	GCNGC	3 cut(s)	42, 154, 309
GsaI	CCCAGC	2 cut(s)	76, 151
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	7 cut(s)	68, 95, 164, 300, 366, 399, 408
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	4 cut(s)	214, 220, 221, 403
HhaI	GCGC	2 cut(s)	104, 153
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	102, 151
HinP1I	GCGC	2 cut(s)	102, 151
HincII	GTYRAC	2 cut(s)	6, 235
HindII	GTYRAC	2 cut(s)	6, 235
HinfI	GANTC	3 cut(s)	59, 141, 200
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	271, 424
Hpy166II	GTNNAC	2 cut(s)	6, 235
Hpy188I	TCNGA	4 cut(s)	81, 211, 343, 379
Hpy8I	GTNNAC	2 cut(s)	6, 235
Hpy99I	CGWCG	5 cut(s)	215, 266, 407, 425, 443
HpyAV	CCTTC	5 cut(s)	106, 115, 196, 214, 298
HpyCH4III	ACNGT	2 cut(s)	13, 130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 170, 251, 405
HpyF3I	CTNAG	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	102, 151
Kzo9I	GATC	3 cut(s)	50, 81, 343
LguI	GCTCTTC	1 cut(s)	323
MalI	GATC	3 cut(s)	52, 83, 345
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	3 cut(s)	50, 81, 343
MboII	GAAGA	6 cut(s)	268, 310, 322, 352, 409, 418
MflI	RGATCY	2 cut(s)	50, 81
MlyI	GAGTC	3 cut(s)	68, 135, 209
MmeI	TCCRAC	1 cut(s)	234
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	4 cut(s)	65, 92, 160, 313
MvaI	CCWGG	4 cut(s)	65, 92, 160, 313
MvnI	CGCG	2 cut(s)	102, 231
MwoI	GCNNNNNNNGC	4 cut(s)	101, 170, 251, 405
NdeII	GATC	3 cut(s)	50, 81, 343
NlaIV	GGNNCC	2 cut(s)	52, 83
NmeAIII	GCCGAG	2 cut(s)	190, 276
PasI	CCCWGGG	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	3 cut(s)	195, 258, 411
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	43, 155, 310
PleI	GAGTC	3 cut(s)	67, 135, 208
PpsI	GAGTC	3 cut(s)	67, 135, 208
Psp6I	CCWGG	4 cut(s)	63, 90, 158, 311
PspFI	CCCAGC	2 cut(s)	72, 147
PspGI	CCWGG	4 cut(s)	63, 90, 158, 311
PspN4I	GGNNCC	2 cut(s)	52, 83
PspPI	GGNCC	2 cut(s)	162, 397
PsuI	RGATCY	2 cut(s)	50, 81
PsyI	GACNNNGTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	323
SatI	GCNGC	3 cut(s)	42, 154, 309
Sau3AI	GATC	3 cut(s)	50, 81, 343
Sau96I	GGNCC	2 cut(s)	162, 397
SchI	GAGTC	3 cut(s)	68, 135, 209
ScrFI	CCNGG	4 cut(s)	65, 92, 160, 313
SetI	ASST	5 cut(s)	35, 171, 243, 330, 437
SfiI	GGCCNNNNNGGCC	1 cut(s)	405
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	8 cut(s)	42, 100, 133, 154, 178, 229, 309, 334
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	4 cut(s)	63, 90, 158, 311
TaaI	ACNGT	2 cut(s)	13, 130
TaqI	TCGA	2 cut(s)	57, 123
TauI	GCSGC	3 cut(s)	44, 156, 311
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	2 cut(s)	153, 427
Tth111I	GACNNNGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.