Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Forward (+)

2290652 .. 2292660

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTCTCGGGTGGTGAGGACTAGTATGAGACTTCGAAGGAGGGATGGTGTGACTCAAAACGAACACCAGGGAGATCAACAAGTGGCTGACCAAGCTCCAACGGTGCCTCAGATTGTGGCTACTCCTCCTAGGATCAATGTGGTTGCTATTGAAGATGATGATGATGTTGTTGAATCAACTGCTTCTGCTTTTGCTCAGGCTAAAAACAAATCGAGAAGTGCACGCAGAGGATCACAAGTAGTTGATGTGGAGTCAGCTGGTGCTAATAGATCCACAAGGCGTCGCTCTGATCAAACTAGTGTTGACTCAGTTGAGCTTAACAAGCCGAGAAAGTCCAAGGCTGTGGCTCCTCCTGTAGAGGAACCAAAATTTAGCTGTCCAATCTGTCTGTGTCCATTTACTCAGGAGGTTTCAACGAAATGTGGTCATATTTTCTGCAAAAAGTGCATAAAGAATGCGTTATCCCTCCAAGCTAAATGCCCGACATGTAGGAAAAAAATCACTGTTAAGGACCTTATCCGGGTCTTCCTTCCAACCACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

9.76

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	126 - 165	1e-09	Ring finger domain
zf-C3HC4_3	PF13920	126 - 169	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	127 - 164	2.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	127 - 162	1.2e-07	RING-type zinc-finger
zf-C3HC4	PF00097	127 - 164	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	127 - 166	9.1e-07	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AclWI	GGATC	3 cut(s)	143, 241, 267
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	3 cut(s)	155, 176, 417
AhlI	ACTAGT	2 cut(s)	23, 299
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	5 cut(s)	98, 260, 319, 378, 476
AluI	AGCT	5 cut(s)	98, 260, 319, 378, 476
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	143, 241, 267
Ama87I	CYCGRG	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	371
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	514
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	226
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	25
BcuI	ACTAGT	2 cut(s)	23, 299
BfaI	CTAG	3 cut(s)	24, 132, 300
BfmI	CTRYAG	1 cut(s)	357
BlnI	CCTAGG	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	71, 524
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	108, 351, 366
BmrFI	CCNGG	2 cut(s)	71, 524
BpiI	GAAGAC	1 cut(s)	520
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	70, 131, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	70, 131, 339
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	125, 212, 324, 419
BseRI	GAGGAG	2 cut(s)	117, 342
BseSI	GKGCMC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	76, 135, 233, 272, 292
BspCNI	CTCAG	4 cut(s)	124, 211, 323, 418
BspLI	GGNNCC	3 cut(s)	108, 351, 366
BspPI	GGATC	3 cut(s)	143, 241, 267
BspT104I	TTCGAA	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	70, 131, 339
BssMI	GATC	5 cut(s)	76, 135, 233, 272, 292
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	2 cut(s)	131, 339
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	106, 508
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	4 cut(s)	111, 198, 310, 405
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	5 cut(s)	79, 138, 236, 275, 295
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	76, 135, 233, 272, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 325, 447
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	69, 522
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	1 cut(s)	272
CviAII	CATG	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	111, 198, 310, 405
DpnI	GATC	5 cut(s)	78, 137, 235, 274, 294
DpnII	GATC	5 cut(s)	76, 135, 233, 272, 292
Eco130I	CCWWGG	2 cut(s)	131, 339
Eco47I	GGWCC	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	131, 339
ErhI	CCWWGG	2 cut(s)	131, 339
FaeI	CATG	1 cut(s)	492
FaiI	YATR	4 cut(s)	29, 432, 452, 490
FatI	CATG	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	292
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	3 cut(s)	24, 132, 300
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	55, 176, 254, 308
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	224, 307
Hpy188I	TCNGA	2 cut(s)	114, 292
Hpy188III	TCNNGA	2 cut(s)	216, 407
Hpy8I	GTNNAC	2 cut(s)	224, 307
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	33, 542
HpyCH4III	ACNGT	2 cut(s)	106, 508
HpyCH4V	TGCA	3 cut(s)	224, 441, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 325, 447
HpyF3I	CTNAG	4 cut(s)	111, 198, 310, 405
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	76, 135, 233, 272, 292
LmnI	GCTCC	2 cut(s)	103, 355
LpnPI	CCDG	7 cut(s)	56, 83, 185, 246, 369, 392, 536
MaeI	CTAG	3 cut(s)	24, 132, 300
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	5 cut(s)	78, 137, 235, 274, 294
MboI	GATC	5 cut(s)	76, 135, 233, 272, 292
MboII	GAAGA	2 cut(s)	167, 520
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	3 cut(s)	49, 263, 302
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	12, 36, 120, 138, 224, 355, 363, 403, 479
MseI	TTAA	2 cut(s)	321, 510
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	2 cut(s)	71, 524
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	95, 325, 447
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	5 cut(s)	76, 135, 233, 272, 292
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	3 cut(s)	108, 351, 366
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	37
PciI	ACATGT	1 cut(s)	488
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	176
PleI	GAGTC	3 cut(s)	49, 262, 302
PpsI	GAGTC	3 cut(s)	49, 262, 302
PpuMI	RGGWCCY	1 cut(s)	514
PscI	ACATGT	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	108, 351, 366
PspPI	GGNCC	1 cut(s)	514
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	321, 510
Sau3AI	GATC	5 cut(s)	76, 135, 233, 272, 292
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	3 cut(s)	49, 263, 302
ScrFI	CCNGG	2 cut(s)	71, 524
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	100, 262, 321, 380, 414, 478, 519
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	514
SpeI	ACTAGT	2 cut(s)	23, 299
Sse9I	AATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	24, 132, 300
StyD4I	CCNGG	2 cut(s)	69, 522
StyI	CCWWGG	2 cut(s)	131, 339
TaaI	ACNGT	2 cut(s)	106, 508
TaqI	TCGA	2 cut(s)	37, 215
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	321, 510
Tru9I	TTAA	2 cut(s)	321, 510
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspRI	CASTG	1 cut(s)	511
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	492
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	24, 132, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.