Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Forward (+)

23098766 .. 23102378

Gene Structure 3613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACAATACACCAGCCTTCCAGTAGGCTGTTTTACATGTTTCACAAGCTGTTGCTGTTATCGGAAGGAAATGCTTTGTATTTTGGCAAGGTCTCTGCAGTCATGGACTACTTTTCGAACATAGGGTTTGCCTCATCTGTACCCATGAATCCTGCTGATTTTCTCTTGGACCTTGCTAATGGGTTGACAAGTGATGGTGCGCATGCAAATGAGTCCATGGATGATCACATGCAGAGCATCGTTGTGGCCTATAAGGAGAGGCTTTCGGAGAAATTGAAGGAGGAACTTGCAGGCAAACAATTCAATGAAGATAAATTATCAAATGGTCCAGAAGACAATAGTAAGGAGGAGTTTGGGAGGTGGCCGACAACATGGTGGCAGCATTTCAGTGTGTTGTTGAGGAGAGGAGTGAGGGAGAGGAAGCATGAGTCCTTCTCTCCTCTCAAGATTTTTGAGGTGCTTGCAGTCTCTCTTCTTACTGCCCTACTATGGTGGAAATCACATATTTCCCACTTACAAGATCAGAATCATTCCTGCCAAGAACCAACAAAATTCACAACTGTTTATGCGTTTGAACCCGATTCAACAGCCGGGTTTCTCGTGTCGGGCTCGTTCGAGCGGCGTGTGGAAGCACTTGATCGAAGCAGCAATAGCACATGTTACCCTCCACCTCTGTCACCAGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

229

Amino Acids

26.1

Weight (kDa)

5.84

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	4 - 105	1.2e-11	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	619
AciI	CCGC	1 cut(s)	619
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflIII	ACRYGT	2 cut(s)	36, 656
AgsI	TTSAA	4 cut(s)	277, 304, 575, 585
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	97, 472
AoxI	GGCC	2 cut(s)	246, 362
ApeKI	GCWGC	2 cut(s)	379, 645
ApoI	RAATTY	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	169, 326
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	669
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	169, 326
BanII	GRGCYC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	391, 657
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	97, 472
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	3 cut(s)	380, 620, 646
BlsI	GCNGC	3 cut(s)	381, 621, 647
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	2 cut(s)	169, 326
BmgT120I	GGNCC	2 cut(s)	169, 326
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	21, 680
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	21, 680
BseRI	GAGGAG	4 cut(s)	362, 415, 420, 429
BseXI	GCAGC	2 cut(s)	391, 657
BshFI	GGCC	2 cut(s)	248, 364
BsiSI	CCGG	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	2 cut(s)	97, 472
BsnI	GGCC	2 cut(s)	248, 364
Bso31I	GGTCTC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	223, 520, 637
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	619
BspANI	GGCC	2 cut(s)	248, 364
BspMAI	CTGCAG	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	21, 680
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	223, 520, 637
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	204, 292, 462
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	226, 523, 640
BstMAI	GTCTC	2 cut(s)	97, 472
BstMBI	GATC	3 cut(s)	223, 520, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstNSI	RCATGY	4 cut(s)	40, 206, 232, 660
BstSCI	CCNGG	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	391, 657
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	248, 364
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	3 cut(s)	204, 292, 462
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	169, 326
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	9 cut(s)	37, 103, 145, 203, 217, 229, 372, 425, 657
CviJI	RGCY	8 cut(s)	16, 28, 49, 248, 262, 364, 590, 609
CviKI_1	RGCY	8 cut(s)	16, 28, 49, 248, 262, 364, 590, 609
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	3 cut(s)	225, 522, 639
DpnII	GATC	3 cut(s)	223, 520, 637
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	611
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	169, 326
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	9 cut(s)	40, 106, 148, 206, 220, 232, 375, 428, 660
FatI	CATG	9 cut(s)	36, 102, 144, 202, 216, 228, 371, 424, 656
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	380, 620, 646
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	380, 620, 646
FspAI	RTGCGCAY	1 cut(s)	201
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	380, 620, 646
HaeIII	GGCC	2 cut(s)	248, 364
HapII	CCGG	1 cut(s)	591
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	9 cut(s)	40, 106, 148, 206, 220, 232, 375, 428, 660
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	5 cut(s)	148, 212, 428, 526, 581
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	669
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	64, 268, 525
Hpy188III	TCNNGA	2 cut(s)	329, 445
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	4 cut(s)	27, 59, 271, 442
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4V	TGCA	5 cut(s)	98, 206, 232, 290, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
Hsp92II	CATG	9 cut(s)	40, 106, 148, 206, 220, 232, 375, 428, 660
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	223, 520, 637
LpnPI	CCDG	7 cut(s)	26, 34, 165, 276, 342, 547, 604
Lsp1109I	GCAGC	2 cut(s)	391, 657
LweI	GCATC	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	659, 675
MalI	GATC	3 cut(s)	225, 522, 639
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	3 cut(s)	223, 520, 637
MboII	GAAGA	3 cut(s)	320, 344, 464
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	4 cut(s)	272, 299, 314, 551
MlyI	GAGTC	2 cut(s)	221, 437
MslI	CAYNNNNRTG	3 cut(s)	207, 242, 387
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	651
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	223, 520, 637
NlaIII	CATG	9 cut(s)	40, 106, 148, 206, 220, 232, 375, 428, 660
NmuCI	GTSAC	1 cut(s)	675
NsbI	TGCGCA	1 cut(s)	201
NspI	RCATGY	4 cut(s)	40, 206, 232, 660
NspV	TTCGAA	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	206
PciI	ACATGT	2 cut(s)	36, 656
PfeI	GAWTC	3 cut(s)	148, 526, 581
PkrI	GCNGC	3 cut(s)	381, 621, 647
PleI	GAGTC	2 cut(s)	220, 436
PpsI	GAGTC	2 cut(s)	220, 436
PscI	ACATGT	2 cut(s)	36, 656
PspPI	GGNCC	2 cut(s)	169, 326
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	3 cut(s)	207, 242, 387
SatI	GCNGC	3 cut(s)	380, 620, 646
Sau3AI	GATC	3 cut(s)	223, 520, 637
Sau96I	GGNCC	2 cut(s)	169, 326
SchI	GAGTC	2 cut(s)	221, 437
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	6 cut(s)	51, 93, 174, 362, 459, 673
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	2 cut(s)	169, 326
SmiMI	CAYNNNNRTG	3 cut(s)	207, 242, 387
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	4 cut(s)	272, 299, 314, 551
SsiI	CCGC	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	116, 615, 640
TasI	AATT	4 cut(s)	272, 299, 314, 551
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	3 cut(s)	148, 526, 581
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	2 cut(s)	379, 645
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	2 cut(s)	161, 321
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	169, 326
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	4 cut(s)	40, 206, 232, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.