Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

38466339 .. 38466557

Gene Structure 219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCTCCAATAGAGCCCCAAAGTGAGCCTGAGGCACCTGCGTTTTCTTGTGTAATCTGCATGGGCCAATTGGTTGAAGAAACATCAACAAAATGCGGCCACATCTTCTGCAAGATGTGCATTGAAAAAGCAATAGCTACTCAACACAAATGCCCTAACTGCAGGCGTAAACTTAGAAAGCGAGACATCTTCAGGGTCCACCTTCCATACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

72

Amino Acids

8.21

Weight (kDa)

8.78

Isoelectric Point (pI)

94.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	16 - 55	3.5e-10	Ring finger domain
zf-C3HC4_3	PF13920	16 - 60	1.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	17 - 54	3.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	17 - 54	4.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	17 - 52	6.9e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	77, 125
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	64, 97
AspS9I	GGNCC	2 cut(s)	64, 196
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	64, 196
BmiI	GGNNCC	3 cut(s)	6, 36, 197
Bse1I	ACTGG	1 cut(s)	213
Bse21I	CCTNAGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	66, 99
BshNI	GGYRCC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	66, 99
Bsp1286I	GDGCHC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	66, 99
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	6, 36, 197
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	30, 173
BstMAI	GTCTC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 159
BstSFI	CTRYAG	1 cut(s)	160
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	66, 99
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	64, 196
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	5, 16, 28, 66, 99, 137
CviKI_1	RGCY	6 cut(s)	5, 16, 28, 66, 99, 137
DdeI	CTNAG	2 cut(s)	30, 173
EaeI	YGGCCR	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 208
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	66, 99
Hin1II	CATG	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	170, 199
Hpy8I	GTNNAC	2 cut(s)	170, 199
HpyAV	CCTTC	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	60, 111, 120, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 159
HpyF3I	CTNAG	2 cut(s)	30, 173
Hsp92II	CATG	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	42, 51, 148, 178
MboII	GAAGA	3 cut(s)	89, 97, 181
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	217
MunI	CAATTG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	117, 159
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	6, 36, 197
PaqCI	CACCTGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	6, 36, 197
PspPI	GGNCC	2 cut(s)	64, 196
PstI	CTGCAG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	217
SatI	GCNGC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	64, 196
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	3 cut(s)	40, 139, 204
SfcI	CTRYAG	1 cut(s)	160
SgeI	CNNG	8 cut(s)	41, 50, 60, 73, 124, 175, 194, 205
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	96
TasI	AATT	1 cut(s)	68
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.