Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

15943292 .. 15947019

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18620.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGCGCTCGACCCATGGTCCCTCGGGTAGTAAGGACCCGCCCTCCTGCAAGAACTGGGCTCAGGCAAAGGAAGAATGAATTGGATCTCAATAGTGCACCACCTGGTGTGAATCAGAATCAGGAGGGAACTTCAGCTCAGGTGTTACCTCAGATTGAGAGACCTAACCAGTCACCATTGGTGATTGATCTTGAGGCTACTGATGATGATGTTGTCATATGTTCTCCCAGAGCTGTTTCCGAAGCTAGAAACAACTCCAGAAGGAACCGATCAAGGCATGTGGTTGATTTGGAATCAGATGTGACTAGGGCCAATTGTCAAAAGCGCAGAAGAGTTGAGCCAAATCGAACAATCATTAATTGCGAGCTTTACATAAACTTGGAGGGCAATAGCAACTCCAATTCAAAGAATGAGCAGGCTATGCAGCCACCACCGCCACCACCACCACCAAAGGAGCCCACCTTTACATGTCCCATCTGCATGGCTCCGTTGGTCGAGGAGATGTCAACAAAATGTGGTCACATTTTTTGTAAGAAATGTATCAAGGCTGCGATAACTGCTCAGGGAAAATGTCCTACCTGTAGGAGAAAAGTAACTGCGAAAGAGCTTATTAGGGTATTCCTTCCTACTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

213

Amino Acids

23.63

Weight (kDa)

9.55

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	159 - 198	1.2e-09	Ring finger domain
zf-C3HC4_3	PF13920	159 - 202	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	160 - 197	3.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	160 - 197	3.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	160 - 195	5.3e-07	RING-type zinc-finger
zf-RING_5	PF14634	160 - 199	3e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	40, 434
AclWI	GGATC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	107
AfeI	AGCGCT	1 cut(s)	7
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	405
AhdI	GACNNNNNGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	137, 233, 245, 367, 607
AluI	AGCT	5 cut(s)	137, 233, 245, 367, 607
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	7
AoxI	GGCC	1 cut(s)	309
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	424, 548
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	8, 327
AspS9I	GGNCC	3 cut(s)	19, 36, 309
AsuHPI	GGTGA	2 cut(s)	165, 193
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	19, 36
BaeGI	GKGCMC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	63, 459
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	436, 535
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	246, 306
BfmI	CTRYAG	1 cut(s)	580
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	2 cut(s)	425, 549
BlsI	GCNGC	2 cut(s)	426, 550
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	19, 36
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	19, 36, 309
BmiI	GGNNCC	5 cut(s)	21, 38, 266, 456, 486
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	3 cut(s)	62, 138, 561
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	15, 23
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bse1I	ACTGG	2 cut(s)	61, 169
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	15, 23
BseMII	CTCAG	4 cut(s)	76, 152, 164, 575
BseNI	ACTGG	2 cut(s)	61, 169
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	436, 535
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	5, 456
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	5, 456
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	63, 100, 459
Bsp143I	GATC	3 cut(s)	85, 187, 269
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	40, 434
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	4 cut(s)	75, 151, 163, 574
BspLI	GGNNCC	5 cut(s)	21, 38, 266, 456, 486
BspPI	GGATC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	61, 169
BssECI	CCNNGG	2 cut(s)	15, 23
BssMI	GATC	3 cut(s)	85, 187, 269
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	365, 417
BstDEI	CTNAG	4 cut(s)	62, 138, 150, 561
BstDSI	CCRYGG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 327
BstKTI	GATC	3 cut(s)	88, 190, 272
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	85, 187, 269
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 433, 557
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	281, 471
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	436, 535
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	365, 417
CfoI	GCGC	2 cut(s)	8, 327
Cfr13I	GGNCC	3 cut(s)	19, 36, 309
CsiI	ACCWGGT	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	4 cut(s)	16, 278, 468, 481
DdeI	CTNAG	4 cut(s)	62, 138, 150, 561
DpnI	GATC	3 cut(s)	87, 189, 271
DpnII	GATC	3 cut(s)	85, 187, 269
DraIII	CACNNNGTG	1 cut(s)	107
DriI	GACNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	325
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	63, 459
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	19, 36
Eco47III	AGCGCT	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	63, 459
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	19, 281, 471, 484
FaiI	YATR	8 cut(s)	17, 218, 220, 279, 374, 422, 469, 482
FaqI	GGGAC	2 cut(s)	5, 456
FatI	CATG	4 cut(s)	15, 277, 467, 480
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	425, 549
FriOI	GRGCYC	2 cut(s)	63, 459
Fsp4HI	GCNGC	2 cut(s)	425, 549
FspBI	CTAG	2 cut(s)	246, 306
GlaI	GCGC	2 cut(s)	7, 326
GluI	GCNGC	2 cut(s)	425, 549
GsuI	CTGGAG	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	8, 327
Hin1II	CATG	4 cut(s)	19, 281, 471, 484
Hin6I	GCGC	2 cut(s)	6, 325
HinP1I	GCGC	2 cut(s)	6, 325
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	3 cut(s)	112, 118, 293
HphI	GGTGA	2 cut(s)	165, 193
Hpy166II	GTNNAC	2 cut(s)	98, 507
Hpy188I	TCNGA	4 cut(s)	117, 153, 241, 298
Hpy188III	TCNNGA	4 cut(s)	122, 191, 258, 636
Hpy8I	GTNNAC	2 cut(s)	98, 507
HpyAV	CCTTC	2 cut(s)	255, 632
HpyCH4V	TGCA	4 cut(s)	50, 98, 424, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 433, 557
HpyF3I	CTNAG	4 cut(s)	62, 138, 150, 561
Hsp92II	CATG	4 cut(s)	19, 281, 471, 484
HspAI	GCGC	2 cut(s)	6, 325
Kzo9I	GATC	3 cut(s)	85, 187, 269
LmnI	GCTCC	2 cut(s)	454, 490
Lsp1109I	GCAGC	2 cut(s)	436, 535
MabI	ACCWGGT	1 cut(s)	103
MaeI	CTAG	2 cut(s)	246, 306
MaeIII	GTNAC	5 cut(s)	144, 171, 301, 518, 592
MalI	GATC	3 cut(s)	87, 189, 271
MboI	GATC	3 cut(s)	85, 187, 269
MboII	GAAGA	2 cut(s)	85, 342
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	3 cut(s)	63, 100, 459
MluCI	AATT	4 cut(s)	80, 313, 358, 400
MnlI	CCTC	7 cut(s)	33, 54, 118, 159, 187, 376, 490
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	421, 433, 557
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	3 cut(s)	85, 187, 269
NlaIII	CATG	4 cut(s)	19, 281, 471, 484
NlaIV	GGNNCC	5 cut(s)	21, 38, 266, 456, 486
NmuCI	GTSAC	3 cut(s)	171, 301, 518
NspI	RCATGY	2 cut(s)	281, 471
PciI	ACATGT	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	112, 118, 293
PkrI	GCNGC	2 cut(s)	426, 550
PpuMI	RGGWCCY	1 cut(s)	36
PscI	ACATGT	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	21, 38, 266, 456, 486
PspPI	GGNCC	3 cut(s)	19, 36, 309
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	425, 549
Sau3AI	GATC	3 cut(s)	85, 187, 269
Sau96I	GGNCC	3 cut(s)	19, 36, 309
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	3 cut(s)	63, 100, 459
SexAI	ACCWGGT	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	580
SinI	GGWCC	2 cut(s)	19, 36
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	80, 313, 358, 400
SsiI	CCGC	2 cut(s)	40, 434
SspMI	CTAG	2 cut(s)	246, 306
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	3 cut(s)	10, 346, 495
TasI	AATT	4 cut(s)	80, 313, 358, 400
TfiI	GAWTC	3 cut(s)	112, 118, 293
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	3 cut(s)	171, 301, 518
TseI	GCWGC	2 cut(s)	424, 548
Tsp45I	GTSAC	3 cut(s)	171, 301, 518
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	477
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	19, 36
VspI	ATTAAT	1 cut(s)	357
XceI	RCATGY	2 cut(s)	281, 471
XspI	CTAG	2 cut(s)	246, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.