Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

19824766 .. 19827879

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGTCCATATCTCCTAAGAGTACCTCCAAGTATATGAAGTTTAGTTTGTTGCTCACCAATATTATACAGGTAGAGAACGAAATCCTCCATGGAAAAAACTACATGGAGAAATCGACAATAGGTGCTAGACTACTGCTCTTGAACCTTTTTGTACTTGGCTTTCTTGCTCAATCAACAGTTCATTCATTGGCCAATGCATCTGCACCTGATCATGATTTTAGCTACATGAAGATTGTGAAGGATGCCACTGATCTACCGTTGGAAGATAAATATGACTATATTGTAGTTGGGGGAGGAACAGCAGGTTGTCCATTAGCAGCAACATTATCAGCAAGCTACTCGGTGCTTGTTCTTGAAAGGGGTAGTGCTCCTACTGCACATCCAAGTGTCTTGCGAGAAGAAGGGTTTCTGAGTAACCTCATGCAAGAAGATGATGGTAAGATCACACCAGCTCAAAAGTTTAAGTCTGAAGACGGTGTTGCTATTGTCAGAGGAAGGGTTCTCGGTGGCTCAAGCATGATCAATGCTGGTTTCTACTCCAAAGCTGACAGGGAATTCTTTGTTAAATCTGGAATTAAATGGGACATGGATTTAGTTTTTTTTTTTTTTGAGAGAAACTGTCAACTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

211

Amino Acids

23.25

Weight (kDa)

6.09

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	25, 156
AgsI	TTSAA	2 cut(s)	145, 359
AluBI	AGCT	4 cut(s)	225, 339, 455, 548
AluI	AGCT	4 cut(s)	225, 339, 455, 548
Alw21I	GWGCWC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BclI	TGATCA	2 cut(s)	211, 522
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmsI	GCATC	2 cut(s)	209, 235
BpiI	GAAGAC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	250, 382
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	2 cut(s)	189, 363
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	211, 253, 444, 522
Bsp19I	CCATGG	1 cut(s)	91
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	4 cut(s)	211, 253, 444, 522
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	4 cut(s)	181, 261, 479, 623
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	18, 413
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	250, 382
BstKTI	GATC	4 cut(s)	214, 256, 447, 525
BstMBI	GATC	4 cut(s)	211, 253, 444, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	250, 382
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	24, 155
CviAII	CATG	7 cut(s)	92, 106, 215, 229, 424, 520, 589
CviJI	RGCY	7 cut(s)	162, 194, 225, 339, 455, 513, 548
CviKI_1	RGCY	7 cut(s)	162, 194, 225, 339, 455, 513, 548
CviQI	GTAC	2 cut(s)	24, 155
DdeI	CTNAG	2 cut(s)	18, 413
DpnI	GATC	4 cut(s)	213, 255, 446, 524
DpnII	GATC	4 cut(s)	211, 253, 444, 522
EaeI	YGGCCR	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	7 cut(s)	95, 109, 218, 232, 427, 523, 592
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	7 cut(s)	91, 105, 214, 228, 423, 519, 588
FbaI	TGATCA	2 cut(s)	211, 522
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	257, 369
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	7 cut(s)	95, 109, 218, 232, 427, 523, 592
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	3 cut(s)	414, 472, 494
Hpy188III	TCNNGA	4 cut(s)	142, 215, 356, 573
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	3 cut(s)	235, 398, 492
HpyCH4III	ACNGT	4 cut(s)	181, 261, 479, 623
HpyCH4V	TGCA	4 cut(s)	200, 206, 380, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	18, 413
Hsp92II	CATG	7 cut(s)	95, 109, 218, 232, 427, 523, 592
Ksp22I	TGATCA	2 cut(s)	211, 522
Kzo9I	GATC	4 cut(s)	211, 253, 444, 522
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	7 cut(s)	56, 222, 291, 465, 516, 538, 558
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	209, 235
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	213, 255, 446, 524
MboI	GATC	4 cut(s)	211, 253, 444, 522
MboII	GAAGA	5 cut(s)	244, 278, 413, 443, 485
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	557, 576
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	37, 98, 290, 431, 488
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	465, 567, 579
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	4 cut(s)	211, 253, 444, 522
NlaIII	CATG	7 cut(s)	95, 109, 218, 232, 427, 523, 592
NsiI	ATGCAT	1 cut(s)	202
PagI	TCATGA	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	25, 156
RsaNI	GTAC	2 cut(s)	24, 155
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	465, 567, 579
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	211, 253, 444, 522
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	209, 235
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	2 cut(s)	557, 576
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	4 cut(s)	181, 261, 479, 623
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	557, 576
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	465, 567, 579
Tru9I	TTAA	3 cut(s)	465, 567, 579
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	4 cut(s)	53, 173, 177, 245
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.