Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

17068623 .. 17071907

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAACCAGCTCCTTACCATGAGCATAGGAGGATCTAGTTACTATCAACAAGTGAATGCGAGCGAGGCTGAAAGAGCGAGAAAATTGGCAAGATCAGTAGATTTGGACCTTAACAATCCACCTCCTAGTGAGATTGTGGCTCTCGCTGGTCCTTCGGGTGTCCAATCTCAACAACATTCTTCGGATTCTCCTGATGATGAATGTTTAATCATATCACCAGGGAAGTTTGAAGAGGCTGTGAATAATTCTCAGAGAAATCCGTCTCGCAGAGTGAGAAGCAATATAGAAGATTTCACTGAAGTTCATGTTGCACATTCTTTTGATTTCTTGTCAGCAGACTTCTTTACATGGGGGTTCGCCTTTGGCAGACTTCAAACTGTCGACGGAGTGGTTCCCTTGAACGATGAAGTTCTCAACAAAACCAAAGATATTCAGGCAACCAGTATCCCCGTGACTCCAATTGAGCCTCTGGGTGAGCCTGAAGCACCTGCATTGTCTTGTGCAATCTGCATGGGCCAATTGGTTGAAGAAACATCAACGAAGTGCGGCCACATTTTCTGCAAGACGTGTATTGAAAAAGCAATAGCTACTCAACACAAATGCCCTAACTGTAGGCGTAAACTTAGAAAACGAGACATCTTCAGGGTCCACCTTCCATACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

5.88

Isoelectric Point (pI)

68.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	166 - 205	1.6e-09	Ring finger domain
zf-C3HC4_3	PF13920	166 - 210	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	167 - 204	2.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	167 - 204	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	167 - 202	3.1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	547
AcuI	CTGAAG	3 cut(s)	318, 501, 625
AflIII	ACRYGT	1 cut(s)	566
AgsI	TTSAA	5 cut(s)	230, 374, 400, 527, 575
AjiI	CACGTC	1 cut(s)	567
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	10, 587
AluI	AGCT	2 cut(s)	10, 587
Alw26I	GTCTC	2 cut(s)	267, 627
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	2 cut(s)	514, 547
AspS9I	GGNCC	4 cut(s)	106, 149, 514, 646
AsuHPI	GGTGA	2 cut(s)	207, 485
AvaII	GGWCC	3 cut(s)	106, 149, 646
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	267, 627
BfaI	CTAG	2 cut(s)	36, 126
BfmI	CTRYAG	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	3 cut(s)	106, 149, 646
BmgBI	CACGTC	1 cut(s)	567
BmgT120I	GGNCC	4 cut(s)	106, 149, 514, 646
BmiI	GGNNCC	2 cut(s)	393, 647
BmrFI	CCNGG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	441, 663
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	441, 663
BshFI	GGCC	2 cut(s)	516, 549
BsmAI	GTCTC	2 cut(s)	267, 627
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	516, 549
Bsp143I	GATC	2 cut(s)	32, 92
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	516, 549
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	393, 647
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	441, 663
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	32, 92
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	379, 611
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	249, 623
BstKTI	GATC	2 cut(s)	35, 95
BstMAI	GTCTC	2 cut(s)	267, 627
BstMBI	GATC	2 cut(s)	32, 92
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	516, 549
BtrI	CACGTC	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	106, 149, 514, 646
CviAII	CATG	4 cut(s)	19, 305, 348, 511
CviJI	RGCY	9 cut(s)	10, 68, 140, 236, 466, 478, 516, 549, 587
CviKI_1	RGCY	9 cut(s)	10, 68, 140, 236, 466, 478, 516, 549, 587
DdeI	CTNAG	2 cut(s)	249, 623
DpnI	GATC	2 cut(s)	34, 94
DpnII	GATC	2 cut(s)	32, 92
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	3 cut(s)	106, 149, 646
Eco57I	CTGAAG	3 cut(s)	318, 501, 625
EcoRII	CCWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	22, 308, 351, 514
FaiI	YATR	8 cut(s)	20, 26, 212, 284, 306, 349, 512, 658
FatI	CATG	4 cut(s)	18, 304, 347, 510
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	2 cut(s)	36, 126
GluI	GCNGC	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	516, 549
Hin1II	CATG	4 cut(s)	22, 308, 351, 514
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	185, 454
HphI	GGTGA	2 cut(s)	207, 485
Hpy166II	GTNNAC	3 cut(s)	382, 620, 649
Hpy188I	TCNGA	2 cut(s)	184, 252
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	3 cut(s)	382, 620, 649
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	162, 662
HpyCH4III	ACNGT	2 cut(s)	379, 611
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	5 cut(s)	311, 491, 503, 510, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	2 cut(s)	249, 623
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	22, 308, 351, 514
Kzo9I	GATC	2 cut(s)	32, 92
LmnI	GCTCC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	36, 126
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	2 cut(s)	38, 451
MalI	GATC	2 cut(s)	34, 94
MboI	GATC	2 cut(s)	32, 92
MboII	GAAGA	5 cut(s)	171, 242, 299, 539, 631
MfeI	CAATTG	2 cut(s)	459, 518
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	4 cut(s)	83, 244, 459, 518
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	23, 58, 132, 226, 477
MseI	TTAA	3 cut(s)	111, 206, 667
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	2 cut(s)	459, 518
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NdeII	GATC	2 cut(s)	32, 92
NlaIII	CATG	4 cut(s)	22, 308, 351, 514
NlaIV	GGNNCC	2 cut(s)	393, 647
NmuCI	GTSAC	1 cut(s)	451
PaqCI	CACCTGC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	393, 647
PspPI	GGNCC	4 cut(s)	106, 149, 514, 646
PsuI	RGATCY	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	3 cut(s)	111, 206, 667
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	2 cut(s)	32, 92
Sau96I	GGNCC	4 cut(s)	106, 149, 514, 646
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	7 cut(s)	12, 111, 124, 490, 569, 589, 654
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	3 cut(s)	106, 149, 646
Sse9I	AATT	4 cut(s)	83, 244, 459, 518
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	2 cut(s)	36, 126
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	379, 611
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	83, 244, 459, 518
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	111, 206, 667
Tru9I	TTAA	3 cut(s)	111, 206, 667
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	17, 213, 293, 420
TspGWI	ACGGA	2 cut(s)	249, 399
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	106, 149, 646
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	36, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.