Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

17076128 .. 17078964

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13481.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAATGGTCAGGCATTTTACTCAGAAGCATTCTATGATTTTACCAACAGCTGCATGGCCTCACATTCTTTGGAGGAATGTTCTCAAAGGGGGAAGAGGCCACTTATTATAGACCTCAACTATCCTGCGCCATGTGAGGAGCTGGATTTAAATACCAGATTTACCTGGTCCAATAGCCAACAAGGTCATGATGAAGGACATGGTTGGTTAGGACCACAAACTTCAAACGATCGTGAGGTCATTGATGATGACATTGCTTTCATATCCCCGGTGATATATGCCCAATCCAAGAATAATTCTAGAAGAAACCTTGAGGTGAGGGATGTCGTAGCTACCAATACAGAAATGCATAGTGGTCATTCAGATTGGGGTGCTCAGATTCCTCAAATTCCCCTTCATTGCCACAAGCGCAAAAGAACTTTACGAAATCAAGCAGTTCTGAATTGGGAGCTTCACTTTAGCTCAGAAGACGGTGACAAGAACAAGATAGAGGAAGTACCTTCTCCTGAAGTTCCTGAGAGCACACCACCTCAAGAGATACCTTCCTTCAGCTGCCCAATATGTTTGGGACCTTTAAGTGAAGAAACATCAACAAAGTGTGGGTGTACCTTCCTACCAAATAATTGCAGAGTGGTTAGGTATCAATATTGGGGAAAAGATACAACTTTTGCTGAAGCTTGCACTAGATGCATGGGGATTATTGTTTGTTGGGGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

5.16

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	3 cut(s)	528, 532, 693
AfaI	GTAC	2 cut(s)	498, 607
AgsI	TTSAA	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	8 cut(s)	51, 142, 332, 451, 462, 552, 677, 717
AluI	AGCT	8 cut(s)	51, 142, 332, 451, 462, 552, 677, 717
Alw21I	GWGCWC	2 cut(s)	376, 524
AoxI	GGCC	2 cut(s)	57, 98
ApeKI	GCWGC	3 cut(s)	51, 552, 714
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	130, 411
AspS9I	GGNCC	3 cut(s)	168, 212, 569
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	283, 328, 485
AvaII	GGWCC	3 cut(s)	168, 212, 569
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	376, 524
BbvI	GCAGC	2 cut(s)	38, 539
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	3 cut(s)	300, 684, 718
BisI	GCNGC	3 cut(s)	52, 553, 715
BlsI	GCNGC	3 cut(s)	53, 554, 716
Bme1390I	CCNGG	2 cut(s)	166, 269
Bme18I	GGWCC	3 cut(s)	168, 212, 569
BmgT120I	GGNCC	3 cut(s)	168, 212, 569
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	166, 269
BmsI	GCATC	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	332, 516
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	267
Bse3DI	GCAATG	2 cut(s)	252, 397
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	252, 397
BseMII	CTCAG	4 cut(s)	36, 389, 477, 507
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	38, 539
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	59, 100
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	376, 524
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	59, 100
Bsp1286I	GDGCHC	2 cut(s)	376, 524
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	59, 100
BspCNI	CTCAG	4 cut(s)	35, 388, 476, 508
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	570
BsrDI	GCAATG	2 cut(s)	252, 397
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	4 cut(s)	22, 375, 463, 516
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	130, 411
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 687
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	164, 267
BstV1I	GCAGC	2 cut(s)	38, 539
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	59, 100
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	130, 411
Cfr13I	GGNCC	3 cut(s)	168, 212, 569
CsiI	ACCWGGT	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	497, 606
CviAII	CATG	5 cut(s)	55, 132, 188, 200, 691
CviQI	GTAC	2 cut(s)	497, 606
DdeI	CTNAG	4 cut(s)	22, 375, 463, 516
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraI	TTTAAA	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	168, 212, 569
Eco57I	CTGAAG	3 cut(s)	528, 532, 693
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	164
EcoT22I	ATGCAT	2 cut(s)	351, 692
FaeI	CATG	5 cut(s)	58, 135, 191, 203, 694
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	54, 131, 187, 199, 690
Fnu4HI	GCNGC	3 cut(s)	52, 553, 715
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	52, 553, 715
FspBI	CTAG	3 cut(s)	300, 684, 718
GlaI	GCGC	2 cut(s)	129, 410
GluI	GCNGC	3 cut(s)	52, 553, 715
HaeIII	GGCC	2 cut(s)	59, 100
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	2 cut(s)	130, 411
Hin1II	CATG	5 cut(s)	58, 135, 191, 203, 694
Hin6I	GCGC	2 cut(s)	128, 409
HinP1I	GCGC	2 cut(s)	128, 409
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	283, 328, 485
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	5 cut(s)	25, 364, 378, 441, 466
Hpy188III	TCNNGA	6 cut(s)	188, 233, 300, 506, 515, 533
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	6 cut(s)	188, 404, 510, 552, 556, 619
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	5 cut(s)	54, 349, 627, 681, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 687
HpyF3I	CTNAG	4 cut(s)	22, 375, 463, 516
Hsp92II	CATG	5 cut(s)	58, 135, 191, 203, 694
HspAI	GCGC	2 cut(s)	128, 409
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	139, 448
LpnPI	CCDG	8 cut(s)	128, 138, 151, 169, 178, 282, 519, 528
Lsp1109I	GCAGC	2 cut(s)	38, 539
LweI	GCATC	1 cut(s)	677
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	3 cut(s)	300, 684, 718
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	106, 315, 479, 593
MhlI	GDGCHC	2 cut(s)	376, 524
MluCI	AATT	4 cut(s)	295, 387, 442, 622
Mph1103I	ATGCAT	2 cut(s)	351, 692
MseI	TTAA	2 cut(s)	149, 575
MspA1I	CMGCKG	2 cut(s)	51, 552
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	166, 269
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	408, 687
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	5 cut(s)	58, 135, 191, 203, 694
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	2 cut(s)	351, 692
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	53, 554, 716
Ple19I	CGATCG	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	168, 212, 569
PspPPI	RGGWCCY	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	232
PvuII	CAGCTG	2 cut(s)	51, 552
RsaI	GTAC	2 cut(s)	498, 607
RsaNI	GTAC	2 cut(s)	497, 606
SaqAI	TTAA	2 cut(s)	149, 575
SatI	GCNGC	3 cut(s)	52, 553, 715
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	3 cut(s)	168, 212, 569
ScrFI	CCNGG	2 cut(s)	166, 269
SduI	GDGCHC	2 cut(s)	376, 524
SexAI	ACCWGGT	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	677
SinI	GGWCC	3 cut(s)	168, 212, 569
SmiI	ATTTAAAT	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	311, 531
SmoI	CTYRAG	2 cut(s)	311, 531
Sse9I	AATT	4 cut(s)	295, 387, 442, 622
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	3 cut(s)	300, 684, 718
StyD4I	CCNGG	2 cut(s)	164, 267
SwaI	ATTTAAAT	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	473
TasI	AATT	4 cut(s)	295, 387, 442, 622
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	149, 575
Tru9I	TTAA	2 cut(s)	149, 575
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	51, 552, 714
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	17, 207, 250, 386
VpaK11BI	GGWCC	3 cut(s)	168, 212, 569
XapI	RAATTY	1 cut(s)	387
XbaI	TCTAGA	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	3 cut(s)	300, 684, 718
Zsp2I	ATGCAT	2 cut(s)	351, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.