Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

32177048 .. 32179997

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGAAGGCGAGAAGGCAGTGAAACGGAAAACCCAAAACAAAATTCCAAGAACTGTTTTCAGAGCATGCAATTAATTTTAAACAAAGACACCTTAATAATGGATTGTATTTTGAAGATAATGAATCAGCTTCTTAGCTTGAGCATAGGAGGATCGAGTTACTTTCAACAAGTGAATGAGAGTGAGGCTGAAAGAGCAAGAAAATTAGCAAGGTTAGTAGATTTGGACCTTAACCATCCACCTCCTAGTGAGAACGTGGCTCTAGCTGCTCCTTCGAGTGTCCAACCTCAACAACAATCTTCGGATGCTCCTGATGATGAATGTCTAATCATATCACCACGGAAGTTTGAAGAGGCCATGAATAATTCTCAGAGAAATCCGTCTCACAGAGTAAGAAGCAATATAGAAGATTTTACTGAAGTTGGTGTTGCACAATCGTTTGATATCTTATCAACAGACTTGATAACATGGGGGATCTCCTTTGGCCGACTTGGAACTGTCAACGGAGTGATTTCCTTGAACGATGAAGTTCTTAACAAAACCGAAGATACTGAAACCAGCATCCCCATGGCTCCAATAGAGCCCCAGGGTGAGCCTGAGGCACCTGCGTTTTCTTGTGTAATCTGCATGGGCCAATTGGTTGAAGAAACATCAACGAAGTGCGGCCACATCTTCTGCAAGATGTGTATTGAAAAAGCAATAGCTACTCAACACAAATGTCCTAACTGCAGGCGTAAACTTAGAAAGCGAGACATCTTCAGGGTCCACCTTCCATACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

261

Amino Acids

29.13

Weight (kDa)

5.49

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	205 - 244	4.6e-09	Ring finger domain
zf-C3HC4_3	PF13920	205 - 249	2.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	206 - 243	4.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	206 - 243	5.8e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	601
AciI	CCGC	1 cut(s)	663
AclWI	GGATC	2 cut(s)	160, 482
AcoI	YGGCCR	2 cut(s)	484, 664
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	438, 742
AgsI	TTSAA	6 cut(s)	115, 167, 350, 520, 644, 692
AjnI	CCWGG	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	4 cut(s)	130, 138, 266, 704
AluI	AGCT	4 cut(s)	130, 138, 266, 704
Alw26I	GTCTC	2 cut(s)	387, 744
AlwI	GGATC	2 cut(s)	160, 482
AoxI	GGCC	4 cut(s)	354, 484, 631, 664
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	43
AseI	ATTAAT	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	226, 631, 763
AsuHPI	GGTGA	2 cut(s)	327, 602
AvaII	GGWCC	2 cut(s)	226, 763
AxyI	CCTNAGG	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	387, 744
BfaI	CTAG	2 cut(s)	246, 263
BfmI	CTRYAG	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	2 cut(s)	267, 664
BlsI	GCNGC	2 cut(s)	268, 665
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	2 cut(s)	226, 763
BmgT120I	GGNCC	3 cut(s)	226, 631, 763
BmiI	GGNNCC	3 cut(s)	573, 603, 764
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	295, 570
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	338, 567, 585, 586
Bse1I	ACTGG	1 cut(s)	780
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	4 cut(s)	338, 567, 585, 586
BseGI	GGATG	3 cut(s)	235, 310, 561
BseMII	CTCAG	2 cut(s)	383, 588
BseNI	ACTGG	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	4 cut(s)	356, 486, 633, 666
BshNI	GGYRCC	1 cut(s)	601
BsmAI	GTCTC	2 cut(s)	387, 744
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	4 cut(s)	356, 486, 633, 666
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	152, 474
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	4 cut(s)	356, 486, 633, 666
BspCNI	CTCAG	2 cut(s)	382, 589
BspLI	GGNNCC	3 cut(s)	573, 603, 764
BspMAI	CTGCAG	1 cut(s)	731
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	2 cut(s)	160, 482
BspT107I	GGYRCC	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	4 cut(s)	338, 567, 585, 586
BssMI	GATC	2 cut(s)	152, 474
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	56, 499
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	68, 731
BstDEI	CTNAG	4 cut(s)	134, 369, 597, 740
BstDSI	CCRYGG	2 cut(s)	338, 567
BstF5I	GGATG	3 cut(s)	235, 310, 561
BstKTI	GATC	2 cut(s)	155, 477
BstMAI	GTCTC	2 cut(s)	387, 744
BstMBI	GATC	2 cut(s)	152, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 266
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	1 cut(s)	727
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	356, 486, 633, 666
BtgI	CCRYGG	2 cut(s)	338, 567
BtsCI	GGATG	3 cut(s)	235, 310, 561
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	68, 731
Cfr13I	GGNCC	3 cut(s)	226, 631, 763
CviAII	CATG	5 cut(s)	67, 358, 468, 568, 628
DdeI	CTNAG	4 cut(s)	134, 369, 597, 740
DpnI	GATC	2 cut(s)	154, 476
DpnII	GATC	2 cut(s)	152, 474
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	484, 664
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	226, 763
Eco57I	CTGAAG	2 cut(s)	438, 742
Eco81I	CCTNAGG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	5 cut(s)	70, 361, 471, 571, 631
FaiI	YATR	9 cut(s)	68, 146, 332, 359, 404, 469, 569, 629, 775
FatI	CATG	5 cut(s)	66, 357, 467, 567, 627
Fnu4HI	GCNGC	2 cut(s)	267, 664
FokI	GGATG	3 cut(s)	222, 317, 548
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	267, 664
FspBI	CTAG	2 cut(s)	246, 263
GluI	GCNGC	2 cut(s)	267, 664
HaeIII	GGCC	4 cut(s)	356, 486, 633, 666
Hin1II	CATG	5 cut(s)	70, 361, 471, 571, 631
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	327, 602
Hpy166II	GTNNAC	3 cut(s)	502, 737, 766
Hpy188I	TCNGA	3 cut(s)	63, 304, 372
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	3 cut(s)	502, 737, 766
HpyAV	CCTTC	3 cut(s)	8, 282, 779
HpyCH4III	ACNGT	2 cut(s)	56, 499
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	70, 431, 627, 678, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 266
HpyF3I	CTNAG	4 cut(s)	134, 369, 597, 740
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	70, 361, 471, 571, 631
Kzo9I	GATC	2 cut(s)	152, 474
LmnI	GCTCC	3 cut(s)	274, 313, 577
LpnPI	CCDG	8 cut(s)	324, 571, 572, 599, 609, 618, 715, 745
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	295, 570
MaeI	CTAG	2 cut(s)	246, 263
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	154, 476
MboI	GATC	2 cut(s)	152, 474
MboII	GAAGA	8 cut(s)	127, 291, 362, 419, 557, 656, 664, 748
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	6 cut(s)	43, 71, 75, 203, 364, 635
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	143, 178, 252, 297, 346, 592
MseI	TTAA	6 cut(s)	74, 80, 95, 231, 534, 784
MslI	CAYNNNNRTG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	194, 266
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	152, 474
NlaIII	CATG	5 cut(s)	70, 361, 471, 571, 631
NlaIV	GGNNCC	3 cut(s)	573, 603, 764
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	613
PasI	CCCWGGG	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	268, 665
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	573, 603, 764
PspPI	GGNCC	3 cut(s)	226, 631, 763
PstI	CTGCAG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	6 cut(s)	74, 80, 95, 231, 534, 784
SatI	GCNGC	2 cut(s)	267, 664
Sau3AI	GATC	2 cut(s)	152, 474
Sau96I	GGNCC	3 cut(s)	226, 631, 763
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	295, 570
SfcI	CTRYAG	1 cut(s)	727
SinI	GGWCC	2 cut(s)	226, 763
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	6 cut(s)	43, 71, 75, 203, 364, 635
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	2 cut(s)	246, 263
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	56, 499
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	155, 275
TasI	AATT	6 cut(s)	43, 71, 75, 203, 364, 635
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	6 cut(s)	74, 80, 95, 231, 534, 784
Tru9I	TTAA	6 cut(s)	74, 80, 95, 231, 534, 784
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	137, 333, 374, 540
TspGWI	ACGGA	4 cut(s)	41, 355, 369, 519
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	226, 763
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	2 cut(s)	246, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.