Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Forward (+)

26662349 .. 26666257

Gene Structure 3909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAAAGCAAAGCACTTTGGTTTAGGATTTTACCAACAGCTCCGTGTGAGGAGGTGGTTCTAAATACCAGATTTGCCTGGGCCAATAGCCAACAAGGTCAAGATGAAGGACATGGTTGGTTAGCACCACAAACTTCAAATGATTGTGAGGTCATTGATGAGGACATTGCTTTCATATCCCCGGTGATATATGCCCAATCCAAGAATAGTTCCAGAAGAAACCTTGAGGTGAGGGACGTCATAGCTGCCAATACAGAAATGCATAGTGGCCATTCAGATTGGGGTGCTCAGATTTCTCAAATTCCCCTTCATTGCCACAAGCGCAAAAGAACTTTACGAAATCAAGCAGTTTTGAATTGGGAGCTTCACTTTAGCTCAGAAGATGGTGACAAGAACAAGATAGAGGAAGTACCTTCTCCTGAGCTTCCTGAGAGCACACCACCTCAAGAGATACCTTCCTTCAGCTGCCCAATATGTTTGGGCCCTTTAAGTGAAGAAACATCAACGAAATGTGGTCACATCTTCTGCAAGATGTGTATTGAAGCATCAATAAAAGTTCAGCACAAATGCCCAACTTGTCGTAAAAAGCTTAGAATGAAAGACACCATCAGGGTGTACCTTCCTACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

6.7

Isoelectric Point (pI)

74.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	155 - 194	5e-09	Ring finger domain
zf-C3HC4_3	PF13920	155 - 197	1e-05	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	156 - 193	1.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	156 - 193	3.2e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	411, 617
AgsI	TTSAA	3 cut(s)	138, 355, 542
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	7 cut(s)	41, 245, 364, 375, 424, 465, 589
AluI	AGCT	7 cut(s)	41, 245, 364, 375, 424, 465, 589
Alw21I	GWGCWC	2 cut(s)	289, 437
AoxI	GGCC	3 cut(s)	81, 268, 481
ApaI	GGGCCC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	245, 465
ApoI	RAATTY	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	81, 481, 482
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	196, 241, 398
BaeGI	GKGCMC	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	289, 437
BbvI	GCAGC	2 cut(s)	232, 452
BccI	CCATC	2 cut(s)	377, 614
BciT130I	CCWGG	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	246, 466
BlsI	GCNGC	2 cut(s)	247, 467
Bme1390I	CCNGG	2 cut(s)	79, 182
BmgT120I	GGNCC	3 cut(s)	81, 481, 482
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	2 cut(s)	79, 182
BmsI	GCATC	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	245, 429
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	78, 180
Bse3DI	GCAATG	2 cut(s)	165, 310
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	78, 180
BseMI	GCAATG	2 cut(s)	165, 310
BseMII	CTCAG	4 cut(s)	302, 390, 411, 420
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	232, 452
BshFI	GGCC	3 cut(s)	83, 270, 483
BsiHKAI	GWGCWC	2 cut(s)	289, 437
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	83, 270, 483
Bsp120I	GGGCCC	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	289, 437, 485
BspANI	GGCC	3 cut(s)	83, 270, 483
BspCNI	CTCAG	4 cut(s)	301, 389, 412, 421
BspLI	GGNNCC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	165, 310
BssECI	CCNNGG	2 cut(s)	78, 180
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	5 cut(s)	288, 376, 420, 429, 590
BstHHI	GCGC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	77, 180
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	232, 452
BsuRI	GGCC	3 cut(s)	83, 270, 483
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	81, 481, 482
Csp6I	GTAC	2 cut(s)	410, 616
CviAII	CATG	1 cut(s)	113
CviQI	GTAC	2 cut(s)	410, 616
DdeI	CTNAG	5 cut(s)	288, 376, 420, 429, 590
EaeI	YGGCCR	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	485
FaeI	CATG	1 cut(s)	116
FaiI	YATR	7 cut(s)	114, 176, 190, 192, 242, 264, 475
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	246, 466
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	246, 466
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	246, 466
HaeIII	GGCC	3 cut(s)	83, 270, 483
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	587
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	196, 241, 398
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	277, 291, 379
Hpy188III	TCNNGA	5 cut(s)	101, 213, 419, 428, 446
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	6 cut(s)	101, 317, 423, 465, 469, 629
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	4, 262, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	5 cut(s)	288, 376, 420, 429, 590
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	46, 361
LpnPI	CCDG	8 cut(s)	64, 82, 91, 195, 226, 432, 441, 595
Lsp1109I	GCAGC	2 cut(s)	232, 452
LweI	GCATC	1 cut(s)	554
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	386, 515
MboII	GAAGA	4 cut(s)	228, 392, 506, 514
MhlI	GDGCHC	3 cut(s)	289, 437, 485
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	300, 355
MluNI	TGGCCA	1 cut(s)	270
MnlI	CCTC	8 cut(s)	43, 46, 142, 154, 220, 225, 397, 453
Mox20I	TGGCCA	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	79, 182
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	1 cut(s)	182
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	386, 515
NsiI	ATGCAT	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	247, 467
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	483
PspOMI	GGGCCC	1 cut(s)	481
PspPI	GGNCC	3 cut(s)	81, 481, 482
PvuII	CAGCTG	1 cut(s)	465
RsaI	GTAC	2 cut(s)	411, 617
RsaNI	GTAC	2 cut(s)	410, 616
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	2 cut(s)	246, 466
Sau96I	GGNCC	3 cut(s)	81, 481, 482
ScrFI	CCNGG	2 cut(s)	79, 182
SduI	GDGCHC	3 cut(s)	289, 437, 485
SfaNI	GCATC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	224, 444
SmoI	CTYRAG	2 cut(s)	224, 444
Sse9I	AATT	2 cut(s)	300, 355
StyD4I	CCNGG	2 cut(s)	77, 180
TaiI	ACGT	1 cut(s)	240
TasI	AATT	2 cut(s)	300, 355
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	386, 515
TseI	GCWGC	2 cut(s)	245, 465
Tsp45I	GTSAC	2 cut(s)	386, 515
TspDTI	ATGAA	4 cut(s)	120, 163, 299, 611
TspGWI	ACGGA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.