Rroxscaffold_5G00358030

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001134
Physical Location & Seq
Reverse (-)
38003289 .. 38007837
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358030.1

Sequence Viewer

Length: 666 bp
ATGGCCTCACACACTTCAGAGGAATGTTCTCAAAGGGGGAAGAGGCCACTAACTATAGACCTCAACTATCCAGCTCCGTGTGAGGAGGTGGTTCTAAATACTAGATTTGCCTGGGCCAATAGCCAACAAGGTCAAGATGAAGGACATGGTCGGTTAGCACCACAAACTTCAAATGATTGTGAGGTCATTGATGAGGACATTGCTTTCATATCCCCAGTGATATATGCCCAATCCAAGAATAGTTCCAGAAGAAACCTTGAGGTGAGGGACGTCGTAGCTACCAATACAGAAATGCATGGTGGCCATTCAGATTGGGGTGCTCAGATTCCTCAAATTCCCCTTCATTGCCACAAGCGCAAAAGAACTTTACGAAATCAAGCAGTTTTGAATTGGGAGCTTCACTTTAGCTCAGAAGATGGTGACAAGAACAAGATAGAGGAAGTACCTTCTCCTGAGCTTCCTGAGAGCACACTACCTCAAGAGATACCTTCCTTCAGCTGCCCAATATGTTTGGGCCCTTTAAGTGAAGAAACATCGACGAAATGTGGTCACATCTTCTGCAAGATGTGTATTGAAGCATCAATAAAAGTTCAGCACAAATGCCCAACTTGTCGTAAAAAGCTTAGAATGAAAGACACCATCAGGGTGTACCTTCCTACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
zf-C3HC4_2 zf-RING_2

Protein Analysis

221

Amino Acids

24.92

Weight (kDa)

6.5

Isoelectric Point (pI)

72.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 166 - 205 5.5e-09 Ring finger domain
zf-C3HC4_2 PF13923 167 - 204 1.6e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 167 - 204 3.5e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 444, 650
AgsI TTSAA 3 cut(s) 171, 388, 575
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 7 cut(s) 74, 278, 397, 408, 457, 498, 622
AluI AGCT 7 cut(s) 74, 278, 397, 408, 457, 498, 622
Alw21I GWGCWC 2 cut(s) 322, 470
AoxI GGCC 5 cut(s) 3, 44, 114, 301, 514
ApaI GGGCCC 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 498
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 114, 514, 515
AsuHPI GGTGA 2 cut(s) 274, 431
BaeGI GKGCMC 1 cut(s) 518
BalI TGGCCA 1 cut(s) 303
BanII GRGCYC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 322, 470
BbvI GCAGC 1 cut(s) 485
BccI CCATC 2 cut(s) 410, 647
BciT130I CCWGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
Bme1390I CCNGG 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 114, 514, 515
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 278, 462
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 198, 343
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 2 cut(s) 198, 343
BseMII CTCAG 4 cut(s) 335, 423, 444, 453
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 1 cut(s) 485
BshFI GGCC 5 cut(s) 5, 46, 116, 303, 516
BsiHKAI GWGCWC 2 cut(s) 322, 470
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 5 cut(s) 5, 46, 116, 303, 516
Bsp120I GGGCCC 1 cut(s) 514
Bsp1286I GDGCHC 3 cut(s) 322, 470, 518
BspANI GGCC 5 cut(s) 5, 46, 116, 303, 516
BspCNI CTCAG 4 cut(s) 334, 422, 445, 454
BspLI GGNNCC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 198, 343
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 270
BstDEI CTNAG 5 cut(s) 321, 409, 453, 462, 623
BstHHI GCGC 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 518
BstV1I GCAGC 1 cut(s) 485
BsuRI GGCC 5 cut(s) 5, 46, 116, 303, 516
BtsIMutI CAGTG 1 cut(s) 222
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 3 cut(s) 114, 514, 515
Csp6I GTAC 2 cut(s) 443, 649
CviAII CATG 2 cut(s) 146, 296
CviQI GTAC 2 cut(s) 443, 649
DdeI CTNAG 5 cut(s) 321, 409, 453, 462, 623
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 518
FaeI CATG 2 cut(s) 149, 299
FaiI YATR 7 cut(s) 56, 147, 209, 223, 225, 297, 508
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 145, 295
Fnu4HI GCNGC 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 499
HaeIII GGCC 5 cut(s) 5, 46, 116, 303, 516
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 149, 299
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 1 cut(s) 325
HphI GGTGA 2 cut(s) 274, 431
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 19, 310, 324, 412
Hpy188III TCNNGA 5 cut(s) 134, 246, 452, 461, 479
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 2 cut(s) 275, 541
HpyAV CCTTC 6 cut(s) 134, 350, 456, 498, 502, 662
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 295, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 5 cut(s) 321, 409, 453, 462, 623
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 149, 299
HspAI GCGC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 79, 394
LpnPI CCDG 8 cut(s) 84, 97, 124, 228, 259, 465, 474, 628
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 419, 548
MboII GAAGA 5 cut(s) 52, 261, 425, 539, 547
MhlI GDGCHC 3 cut(s) 322, 470, 518
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 333, 388
MluNI TGGCCA 1 cut(s) 303
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 297
MscI TGGCCA 1 cut(s) 303
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 644
Msp20I TGGCCA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 354
NlaIII CATG 2 cut(s) 149, 299
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 419, 548
NsiI ATGCAT 1 cut(s) 297
PfeI GAWTC 1 cut(s) 325
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 516
PspOMI GGGCCC 1 cut(s) 514
PspPI GGNCC 3 cut(s) 114, 514, 515
PsyI GACNNNGTC 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 498
RsaI GTAC 2 cut(s) 444, 650
RsaNI GTAC 2 cut(s) 443, 649
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 499
Sau96I GGNCC 3 cut(s) 114, 514, 515
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 3 cut(s) 322, 470, 518
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 257, 477
SmoI CTYRAG 2 cut(s) 257, 477
Sse9I AATT 2 cut(s) 333, 388
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 110
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 536
TasI AATT 2 cut(s) 333, 388
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 419, 548
TseI GCWGC 1 cut(s) 498
Tsp45I GTSAC 2 cut(s) 419, 548
TspDTI ATGAA 4 cut(s) 153, 196, 332, 644
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 222
Tth111I GACNNNGTC 1 cut(s) 147
XapI RAATTY 1 cut(s) 333
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.