Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Forward (+)

19900293 .. 19900805

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0125500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCAGCAGTCTCGAGAGAAAGACCCATCTGGGAAAAGGGCTCAAACAAAGAGAACACTGGAATAATCAGAGCGAATCAGAATTTGCAGAATGGATTTTCAAAGCAACACGAACAAGAAGAATCGTCGGTAAAGAACGAGGAAGAGTGGATAAAGATTGGCGATGAGTATTTCCAAAACCCTGTATCGATCACAGTGAATGGGACACTGAAACAAGTCGTCAAGGAATTTGTGATAGCAGATCCAGTATCAGATCAGTTTGATCAGAAGAATGAGATCCAAAAGAGAAAAAGAGACCAATTTGAAGCTGAAAACCAAGAAGAGGCTGCTCCGGACATGAGTTATGCGTTCATCAAGAATCGTAGCACTAACTCGGAAGAGACGTATGTGAAGCTTGATATTATAAACGAGCGATTCATGTCAACTGTTGTGGATTTGGAAGAAAATGAAGACAAGGTGAACACATTGCCTTGTGGTTTTAGAACCAAGAGGAGGTACCTTTATGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

170

Amino Acids

19.92

Weight (kDa)

4.91

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	331
AclWI	GGATC	2 cut(s)	236, 271
AcsI	RAATTY	3 cut(s)	82, 227, 507
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	322, 492
AgsI	TTSAA	2 cut(s)	102, 305
AluBI	AGCT	2 cut(s)	308, 394
AluI	AGCT	2 cut(s)	308, 394
Alw26I	GTCTC	3 cut(s)	16, 288, 374
AlwI	GGATC	2 cut(s)	236, 271
Ama87I	CYCGRG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	82, 227, 507
Asp718I	GGTACC	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	16, 288, 374
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 492
Bse1I	ACTGG	2 cut(s)	64, 245
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	322, 492
BseMI	GCAATG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	64, 245
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	495
BshVI	ATCGAT	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	322, 492
BsmAI	GTCTC	3 cut(s)	16, 288, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	217
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	189, 241, 253, 262, 276
BspDI	ATCGAT	1 cut(s)	188
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	236, 271
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	64, 245
BssMI	GATC	5 cut(s)	189, 241, 253, 262, 276
Bst4CI	ACNGT	2 cut(s)	196, 427
Bst6I	CTCTTC	3 cut(s)	138, 315, 372
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	192, 244, 256, 265, 279
BstMAI	GTCTC	3 cut(s)	16, 288, 374
BstMBI	GATC	5 cut(s)	189, 241, 253, 262, 276
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	241, 276
BstYI	RGATCY	2 cut(s)	241, 276
Bsu15I	ATCGAT	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	57, 201, 206
Cac8I	GCNNGC	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	496
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	2 cut(s)	337, 418
CviJI	RGCY	4 cut(s)	42, 308, 326, 394
CviKI_1	RGCY	4 cut(s)	42, 308, 326, 394
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	5 cut(s)	191, 243, 255, 264, 278
DpnII	GATC	5 cut(s)	189, 241, 253, 262, 276
Eam1104I	CTCTTC	3 cut(s)	138, 315, 372
EarI	CTCTTC	3 cut(s)	138, 315, 372
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	44
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	2 cut(s)	340, 421
FaiI	YATR	6 cut(s)	338, 345, 387, 404, 419, 504
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	336, 417
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	340, 421
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	4 cut(s)	76, 122, 358, 414
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	423, 460
Hpy188I	TCNGA	5 cut(s)	71, 81, 253, 267, 376
Hpy188III	TCNNGA	4 cut(s)	13, 15, 332, 355
Hpy8I	GTNNAC	2 cut(s)	423, 460
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	196, 427
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	340, 421
Kpn2I	TCCGGA	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	189, 241, 253, 262, 276
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	16, 18, 45, 195, 258, 345
Lsp1109I	GCAGC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	383
MalI	GATC	5 cut(s)	191, 243, 255, 264, 278
MboI	GATC	5 cut(s)	189, 241, 253, 262, 276
MboII	GAAGA	7 cut(s)	131, 155, 280, 332, 389, 452, 461
MflI	RGATCY	2 cut(s)	241, 276
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	4 cut(s)	82, 227, 299, 507
MnlI	CCTC	4 cut(s)	133, 316, 483, 486
MroI	TCCGGA	1 cut(s)	331
MspI	CCGG	1 cut(s)	332
NdeII	GATC	5 cut(s)	189, 241, 253, 262, 276
NlaIII	CATG	2 cut(s)	340, 421
NlaIV	GGNNCC	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PfeI	GAWTC	4 cut(s)	76, 122, 358, 414
PkrI	GCNGC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	241, 276
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	5 cut(s)	189, 241, 253, 262, 276
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	6 cut(s)	310, 386, 396, 459, 497, 501
Sfr274I	CTCGAG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	4 cut(s)	82, 227, 299, 507
TaaI	ACNGT	2 cut(s)	196, 427
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	14, 188
TasI	AATT	4 cut(s)	82, 227, 299, 507
TfiI	GAWTC	4 cut(s)	76, 122, 358, 414
TscAI	CASTG	3 cut(s)	64, 201, 213
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	340, 406, 462
TspRI	CASTG	3 cut(s)	64, 201, 213
XapI	RAATTY	3 cut(s)	82, 227, 507
XhoI	CTCGAG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.