Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

30090305 .. 30093322

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1172100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGCACTCGGGGGGCCAGGGCGCCACATGCAAGAGGGCGGCGAAGAAAGAATGAGTTGAACTTGGACCTCAATAGTGCCCCACCTGGTGACAGTCGGGAACAGGAGGGAACTTCAACTCAGTCAGTGCCTCAGAATAATCAAGCGACTTTGCAAGTTCAGCCTATACCACCTAATACGATTGATGTTGAGGCTATTGATGATGATGCTAAAAACAATTCCAGAAGGAACCGGAGGACTGTTGTTGATGTGGAATCAGAACGGACGGCTAGGGTCACTCAGAACAAGCGCAGAAGAGTTGGACCAAACCAAACAATTATTAATTGTGATTTCTACATAAATCTGGAAAGCAACAGCAACTCCACCTCCACGAAACAGAATGTTACACAGCCACCTCCACCACCACCGCCACCAAAGGAGCCCACCTTTACCTGTCCCATTTGCATGGCTCCTTTAGTTGAGGAGATGTCAACAAAATGTGGCCACATTTTCTGTAAGGCTTGCATTAAAGCTGCAATAGGTGCGCAGGGCAGATGCCCTACCTGTAGGAGAAAAGTAACTATGAAAGAACTGATTAGGGTATTCCTCCCTACGACCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

201

Amino Acids

22.2

Weight (kDa)

9.55

Isoelectric Point (pI)

72.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	144 - 183	2.4e-09	Ring finger domain
zf-C3HC4_3	PF13920	144 - 187	2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	145 - 182	3.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	145 - 182	5.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	145 - 180	3.8e-07	RING-type zinc-finger
zf-RING_5	PF14634	145 - 184	2.6e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	40, 407
AcoI	YGGCCR	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	61, 117
AjnI	CCWGG	2 cut(s)	17, 85
AluBI	AGCT	1 cut(s)	512
AluI	AGCT	1 cut(s)	512
Alw21I	GWGCWC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	15, 481
ApeKI	GCWGC	1 cut(s)	512
AseI	ATTAAT	1 cut(s)	321
AspLEI	GCGC	3 cut(s)	25, 291, 526
AspS9I	GGNCC	3 cut(s)	15, 67, 302
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	67, 302
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	499
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	2 cut(s)	19, 87
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	2 cut(s)	41, 513
BlsI	GCNGC	2 cut(s)	42, 514
Bme1390I	CCNGG	2 cut(s)	19, 87
Bme18I	GGWCC	2 cut(s)	67, 302
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	15, 67, 302
BmiI	GGNNCC	5 cut(s)	16, 24, 230, 420, 450
BmrFI	CCNGG	2 cut(s)	19, 87
BmsI	GCATC	2 cut(s)	196, 524
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 350, 374, 380
BseBI	CCWGG	2 cut(s)	19, 87
BseDI	CCNNGG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	134, 146, 293
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	2 cut(s)	17, 483
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	17, 483
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	8, 82, 423
BspACI	CCGC	2 cut(s)	40, 407
BspANI	GGCC	2 cut(s)	17, 483
BspCNI	CTCAG	3 cut(s)	133, 145, 292
BspLI	GGNNCC	5 cut(s)	16, 24, 230, 420, 450
BspT107I	GGYRCC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	19, 87
Bst4CI	ACNGT	2 cut(s)	95, 241
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	3 cut(s)	120, 132, 279
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	3 cut(s)	25, 291, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 160, 521
BstNI	CCWGG	2 cut(s)	19, 87
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	17, 85
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	499
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	17, 483
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	502
CfoI	GCGC	3 cut(s)	25, 291, 526
Cfr13I	GGNCC	3 cut(s)	15, 67, 302
CsiI	ACCWGGT	1 cut(s)	85
CviAII	CATG	2 cut(s)	29, 445
DdeI	CTNAG	3 cut(s)	120, 132, 279
DinI	GGCGCC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	67, 302
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	17, 85
EcoT38I	GRGCYC	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
FaeI	CATG	2 cut(s)	32, 448
FaiI	YATR	5 cut(s)	30, 167, 338, 446, 563
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	2 cut(s)	28, 444
Fnu4HI	GCNGC	2 cut(s)	41, 513
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	2 cut(s)	41, 513
FspBI	CTAG	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	3 cut(s)	24, 290, 525
GluI	GCNGC	2 cut(s)	41, 513
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	17, 483
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	3 cut(s)	25, 291, 526
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	32, 448
Hin6I	GCGC	3 cut(s)	23, 289, 524
HinP1I	GCGC	3 cut(s)	23, 289, 524
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	3 cut(s)	135, 259, 282
Hpy188III	TCNNGA	3 cut(s)	98, 222, 344
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	2 cut(s)	95, 241
HpyCH4V	TGCA	5 cut(s)	32, 154, 444, 504, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 160, 521
HpyF3I	CTNAG	3 cut(s)	120, 132, 279
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	32, 448
HspAI	GCGC	3 cut(s)	23, 289, 524
KasI	GGCGCC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	418, 454
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	196, 524
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	89, 274, 382, 556
MboII	GAAGA	2 cut(s)	57, 306
MhlI	GDGCHC	3 cut(s)	8, 82, 423
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	3 cut(s)	217, 315, 322
MluNI	TGGCCA	1 cut(s)	483
Mly113I	GGCGCC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	2 cut(s)	321, 507
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	483
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	2 cut(s)	19, 87
MvaI	CCWGG	2 cut(s)	19, 87
MwoI	GCNNNNNNNGC	3 cut(s)	29, 160, 521
NarI	GGCGCC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	32, 448
NlaIV	GGNNCC	5 cut(s)	16, 24, 230, 420, 450
NmuCI	GTSAC	2 cut(s)	89, 274
NsbI	TGCGCA	1 cut(s)	525
NspI	RCATGY	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	42, 514
PluTI	GGCGCC	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	17, 85
PspGI	CCWGG	2 cut(s)	17, 85
PspN4I	GGNNCC	5 cut(s)	16, 24, 230, 420, 450
PspPI	GGNCC	3 cut(s)	15, 67, 302
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	321, 507
SatI	GCNGC	2 cut(s)	41, 513
Sau96I	GGNCC	3 cut(s)	15, 67, 302
ScrFI	CCNGG	2 cut(s)	19, 87
SduI	GDGCHC	3 cut(s)	8, 82, 423
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	196, 524
SfcI	CTRYAG	1 cut(s)	544
SfoI	GGCGCC	1 cut(s)	24
SinI	GGWCC	2 cut(s)	67, 302
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	217, 315, 322
SsiI	CCGC	2 cut(s)	40, 407
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	17, 85
TaaI	ACNGT	2 cut(s)	95, 241
TasI	AATT	3 cut(s)	217, 315, 322
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	321, 507
Tru9I	TTAA	2 cut(s)	321, 507
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	89, 274
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	2 cut(s)	89, 274
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	67, 302
VspI	ATTAAT	1 cut(s)	321
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.