Rmu_sc0003264.1_g000011

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003264.1
OG0001134
Physical Location & Seq
Forward (+)
46775 .. 49967
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003264.1_g000011.1.cds

Sequence Viewer

Length: 774 bp
atggcctcacacacttcagaggaatgttctcaaaaggggaagaggccactaactatagacctcaactatccagctccgtgtgaggaggtggttctaaataccagatttgcctgggccaatagccaacaaggtcaagatgaaggacatggtcggttagcaccacaaacttcaaatgattgtgaggtcattgatgaggacattgctttcatatccccggtgatatatgcccaatccaagaatagttccagaagaaaccttgaggtgagggacgtcgtagctaccaatacagaaatgcatagtagccattcagactggggtgctcagattgctcaaattccccttcattgccacaagcgcaaaagaactttacgaaatcaagcagttttgaattgggagcttcactttagctcagacgatggtgacaagaacaagattgctcaaattccccttcattgccacaagcgcaaaagaactttacgaaatcaagcagttttgaattgggagcttcactttagctcagacgatggtgacaagaacaagatagaggaagtaccttctcctgagcttcctgagagcacaccacctcaagagataccttccttcagctgcccaatatgtttgggccctttaagtgaagaaacatcaacgaaatgtggtcacatcttctgcaagatgtgtattgaagcatcaataaaagttcagcacaaatgcccaacttgtcgtaaaaagcttagaatgaaagacaccatcagggtgtaccttcctaccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
zf-C3HC4_2 zf-RING_2

Protein Analysis

257

Amino Acids

29.15

Weight (kDa)

7.58

Isoelectric Point (pI)

68.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AcsI RAATTY 2 cut(s) 333, 441
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 552, 758
AgsI TTSAA 4 cut(s) 171, 388, 496, 683
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 9 cut(s) 74, 278, 397, 408, 505, 516, 565, 606, 730
AluI AGCT 9 cut(s) 74, 278, 397, 408, 505, 516, 565, 606, 730
Alw21I GWGCWC 2 cut(s) 322, 578
AoxI GGCC 4 cut(s) 3, 44, 114, 622
ApaI GGGCCC 1 cut(s) 626
ApeKI GCWGC 1 cut(s) 606
ApoI RAATTY 2 cut(s) 333, 441
AspLEI GCGC 2 cut(s) 357, 465
AspS9I GGNCC 3 cut(s) 114, 622, 623
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 229, 274, 431, 539
BaeGI GKGCMC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 626
Bbv12I GWGCWC 2 cut(s) 322, 578
BbvI GCAGC 1 cut(s) 593
BccI CCATC 3 cut(s) 410, 518, 755
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 607
BlsI GCNGC 1 cut(s) 608
Bme1390I CCNGG 2 cut(s) 112, 215
BmgT120I GGNCC 3 cut(s) 114, 622, 623
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 2 cut(s) 112, 215
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 695
BmuI ACTGGG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 278, 570
BpuMI CCSGG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 111, 213
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 3 cut(s) 198, 343, 451
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 111, 213
BseMI GCAATG 3 cut(s) 198, 343, 451
BseMII CTCAG 5 cut(s) 335, 423, 531, 552, 561
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 1 cut(s) 593
BshFI GGCC 4 cut(s) 5, 46, 116, 624
BsiHKAI GWGCWC 2 cut(s) 322, 578
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 5, 46, 116, 624
Bsp120I GGGCCC 1 cut(s) 622
Bsp1286I GDGCHC 3 cut(s) 322, 578, 626
BspANI GGCC 4 cut(s) 5, 46, 116, 624
BspCNI CTCAG 5 cut(s) 334, 422, 530, 553, 562
BspLI GGNNCC 1 cut(s) 624
BsrDI GCAATG 3 cut(s) 198, 343, 451
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 111, 213
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 270
BstDEI CTNAG 6 cut(s) 321, 409, 517, 561, 570, 731
BstHHI GCGC 2 cut(s) 357, 465
BstMWI GCNNNNNNNGC 3 cut(s) 326, 354, 462
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 110, 213
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 593
BsuRI GGCC 4 cut(s) 5, 46, 116, 624
CfoI GCGC 2 cut(s) 357, 465
Cfr13I GGNCC 3 cut(s) 114, 622, 623
Csp6I GTAC 2 cut(s) 551, 757
CviAII CATG 1 cut(s) 146
CviQI GTAC 2 cut(s) 551, 757
DdeI CTNAG 6 cut(s) 321, 409, 517, 561, 570, 731
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 626
FaeI CATG 1 cut(s) 149
FaiI YATR 7 cut(s) 56, 147, 209, 223, 225, 297, 616
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 607
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 1 cut(s) 607
GlaI GCGC 2 cut(s) 356, 464
GluI GCNGC 1 cut(s) 607
HaeIII GGCC 4 cut(s) 5, 46, 116, 624
HapII CCGG 1 cut(s) 215
HhaI GCGC 2 cut(s) 357, 465
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 2 cut(s) 355, 463
HinP1I GCGC 2 cut(s) 355, 463
HindIII AAGCTT 1 cut(s) 728
HpaII CCGG 1 cut(s) 215
HphI GGTGA 4 cut(s) 229, 274, 431, 539
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 5 cut(s) 19, 310, 324, 412, 520
Hpy188III TCNNGA 5 cut(s) 134, 246, 560, 569, 587
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 7 cut(s) 134, 350, 458, 564, 606, 610, 770
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 295, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 354, 462
HpyF3I CTNAG 6 cut(s) 321, 409, 517, 561, 570, 731
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 2 cut(s) 355, 463
LmnI GCTCC 3 cut(s) 79, 394, 502
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 695
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 419, 527, 656
MboII GAAGA 4 cut(s) 52, 261, 647, 655
MhlI GDGCHC 3 cut(s) 322, 578, 626
MluCI AATT 4 cut(s) 333, 388, 441, 496
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 1 cut(s) 629
MslI CAYNNNNRTG 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 112, 215
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 326, 354, 462
NciI CCSGG 1 cut(s) 215
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 3 cut(s) 419, 527, 656
NsiI ATGCAT 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 624
PspOMI GGGCCC 1 cut(s) 622
PspPI GGNCC 3 cut(s) 114, 622, 623
PsyI GACNNNGTC 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 606
RsaI GTAC 2 cut(s) 552, 758
RsaNI GTAC 2 cut(s) 551, 757
RseI CAYNNNNRTG 1 cut(s) 752
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 1 cut(s) 607
Sau96I GGNCC 3 cut(s) 114, 622, 623
ScrFI CCNGG 2 cut(s) 112, 215
SduI GDGCHC 3 cut(s) 322, 578, 626
SfaNI GCATC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 2 cut(s) 257, 585
SmoI CTYRAG 2 cut(s) 257, 585
Sse9I AATT 4 cut(s) 333, 388, 441, 496
StyD4I CCNGG 2 cut(s) 110, 213
TaiI ACGT 1 cut(s) 273
TasI AATT 4 cut(s) 333, 388, 441, 496
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TseFI GTSAC 3 cut(s) 419, 527, 656
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 3 cut(s) 419, 527, 656
TspDTI ATGAA 5 cut(s) 153, 196, 332, 440, 752
TspGWI ACGGA 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 147
XapI RAATTY 2 cut(s) 333, 441
ZraI GACGTC 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.