Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

35975906 .. 35978782

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAATTAATTTTAAACAAAGACACCTTAATAATGGATTGTATTTTGAAGATAATGAATCAGCTTCTTAGCTTGAGCATTGGAGGGTCGAGTTACTTTCAACAAGTGAATGAGAGTGAGGCTGAAAGAGCGAGAAAATTAGCAAGGTTAGTAGATTTGGACCTTAACCATCCACCTCCTAGTGAGAACGTGGCTCTAGCTGCTCCTTCAAGTGTCCAACCCCAACAACAATCTTCAGACGCTCCTGATGATGAATGTCTAATCATATCACCACGGAAGTTTGAAGAGGCCATGAATAATTCTCAGAGAAATCAGTCTCACAGAGTAAGAAGCAATATAGAAGATTTTACTGAAGTTGGTGTTGCACAATCGTTTGATATCTTATCAACAGACTTGATAACATGGGGGATCTCCTTCGGCCGACTTGGAACTGTCAACGGAGTGATTTCCTTGAACGATGAAGTTCTTAACAAAACCAAAGATACTGAAACCAGTATCCCCATGGCTCCAATAGAGCCCCAGTGTGAGCCCAATGCACCTGTGTTTTCTTGTGTAATCTGCATGGGCCAATTGATTGAAGAAACATCAACGAAGTGCGGCCACATCTTCTGCAAGATGTGTATTGAAAAAGCAATAGCTACTCAACACAAATGCCCTAACTGCAGGCGTAAACTTAGAAAGCGAGACATCTTCAGGGTCCACCTTCCATACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

239

Amino Acids

26.72

Weight (kDa)

5.77

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	183 - 222	6.5e-09	Ring finger domain
zf-C3HC4_3	PF13920	183 - 227	2.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	184 - 221	4.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	184 - 221	6.3e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	2 cut(s)	418, 598
AcuI	CTGAAG	3 cut(s)	219, 372, 676
AgsI	TTSAA	7 cut(s)	49, 101, 210, 284, 454, 578, 626
AluBI	AGCT	4 cut(s)	64, 72, 200, 638
AluI	AGCT	4 cut(s)	64, 72, 200, 638
Alw26I	GTCTC	2 cut(s)	321, 678
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	4 cut(s)	288, 418, 565, 598
ApeKI	GCWGC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	160, 565, 697
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	160, 697
BanII	GRGCYC	2 cut(s)	519, 531
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	321, 678
BfaI	CTAG	2 cut(s)	180, 197
BfmI	CTRYAG	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	201, 598
BlsI	GCNGC	2 cut(s)	202, 599
Bme18I	GGWCC	2 cut(s)	160, 697
BmgT120I	GGNCC	3 cut(s)	160, 565, 697
BmiI	GGNNCC	2 cut(s)	507, 698
BmrI	ACTGGG	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	272, 501
Bse1I	ACTGG	3 cut(s)	492, 520, 714
BseDI	CCNNGG	2 cut(s)	272, 501
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	3 cut(s)	492, 520, 714
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	4 cut(s)	290, 420, 567, 600
BsiEI	CGRYCG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	321, 678
BsnI	GGCC	4 cut(s)	290, 420, 567, 600
Bsp1286I	GDGCHC	2 cut(s)	519, 531
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	4 cut(s)	290, 420, 567, 600
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	507, 698
BspMAI	CTGCAG	1 cut(s)	665
BspPI	GGATC	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	492, 520, 714
BssECI	CCNNGG	2 cut(s)	272, 501
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	3 cut(s)	68, 303, 674
BstDSI	CCRYGG	2 cut(s)	272, 501
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	321, 678
BstMBI	GATC	1 cut(s)	408
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 200, 660
BstSFI	CTRYAG	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BstZI	CGGCCG	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	290, 420, 567, 600
BtgI	CCRYGG	2 cut(s)	272, 501
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	665
Cfr13I	GGNCC	3 cut(s)	160, 565, 697
CseI	GACGC	1 cut(s)	248
CviAII	CATG	4 cut(s)	292, 402, 502, 562
DdeI	CTNAG	3 cut(s)	68, 303, 674
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraI	TTTAAA	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	418, 598
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	2 cut(s)	519, 531
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	160, 697
Eco52I	CGGCCG	1 cut(s)	418
Eco57I	CTGAAG	3 cut(s)	219, 372, 676
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	2 cut(s)	519, 531
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	295, 405, 505, 565
FaiI	YATR	7 cut(s)	266, 293, 338, 403, 503, 563, 709
FatI	CATG	4 cut(s)	291, 401, 501, 561
Fnu4HI	GCNGC	2 cut(s)	201, 598
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	2 cut(s)	519, 531
Fsp4HI	GCNGC	2 cut(s)	201, 598
FspBI	CTAG	2 cut(s)	180, 197
GluI	GCNGC	2 cut(s)	201, 598
HaeIII	GGCC	4 cut(s)	290, 420, 567, 600
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	295, 405, 505, 565
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	3 cut(s)	436, 671, 700
Hpy188I	TCNGA	2 cut(s)	238, 306
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	3 cut(s)	436, 671, 700
HpyAV	CCTTC	3 cut(s)	216, 424, 713
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	4, 365, 536, 561, 612, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 200, 660
HpyF3I	CTNAG	3 cut(s)	68, 303, 674
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	295, 405, 505, 565
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	208, 247, 511
LpnPI	CCDG	6 cut(s)	258, 505, 533, 552, 649, 679
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	180, 197
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	7 cut(s)	61, 225, 296, 353, 590, 598, 682
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	519, 531
MluCI	AATT	5 cut(s)	5, 9, 137, 298, 569
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	77, 112, 186, 280
MseI	TTAA	6 cut(s)	8, 14, 29, 165, 468, 718
MunI	CAATTG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	128, 200, 660
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	4 cut(s)	295, 405, 505, 565
NlaIV	GGNNCC	2 cut(s)	507, 698
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	202, 599
PshBI	ATTAAT	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	507, 698
PspPI	GGNCC	3 cut(s)	160, 565, 697
PstI	CTGCAG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	408
SaqAI	TTAA	6 cut(s)	8, 14, 29, 165, 468, 718
SatI	GCNGC	2 cut(s)	201, 598
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	3 cut(s)	160, 565, 697
SduI	GDGCHC	2 cut(s)	519, 531
SfcI	CTRYAG	1 cut(s)	661
SinI	GGWCC	2 cut(s)	160, 697
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	5 cut(s)	5, 9, 137, 298, 569
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	2 cut(s)	180, 197
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	89
TasI	AATT	5 cut(s)	5, 9, 137, 298, 569
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	6 cut(s)	8, 14, 29, 165, 468, 718
Tru9I	TTAA	6 cut(s)	8, 14, 29, 165, 468, 718
TscAI	CASTG	1 cut(s)	527
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	71, 267, 308, 474
TspGWI	ACGGA	2 cut(s)	289, 453
TspRI	CASTG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	160, 697
VspI	ATTAAT	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	2 cut(s)	180, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.