Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Forward (+)

22100189 .. 22102717

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGCACTCGGGTGGCAAGGGGCCCTTCTGCAAGAACTGGTCTCAGGCGAAGGAAGAATGAATTAGATCTCAATAGTGCACCACCTGGTGAGAATCGGAATCAAGAGGGAACTTCAGCTCAGGTGTTACCTCAGGTCGAGAGACCTAGCCAGCCCCCATTGGTGATTGATCTTGAGGCTATTGATGATGATGTGGTCATATCTTCCCCCAGGGCTATTGCTGAAGCTGAAAACAATTCCAGAAGGAACCGAAGGAGGCCTGTGGTTGATTTGGAATCAGAACTGCCTAGGGCCACTCGTCAAAAGCGCAGAAGAGTTGAGCCAAATCAAACAATCATTAATTGCGAACTTTACATAAACTTGGATGGCAATAGCAACTCCAATTCAAAGAATGAGCGGGCTATGCAGCCACCACTGCCGCCGCCACCAAAGGAGCCCACCTTTACCTGTCCCATTTGCATGGCTCCGTTGGTTGAGGAGATGTCAACAAAATGTGGTCACATTTTCTGGTATTCCTTCCTACTTCCTCCTGAGTCTGCAACTCATGCCTCTATGATTGATCATGGTTATGTAAAGTGCTTTCTGGGGATGGAGGACCGAAAGAATTGTTGTGCCAGGTCTTCAGAACTGATATTTCATACTTGGGATGAATTGTCGGAAACATGTGCAGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

226

Amino Acids

25.34

Weight (kDa)

6.45

Isoelectric Point (pI)

69.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	3 cut(s)	397, 419, 422
AcuI	CTGAAG	3 cut(s)	99, 243, 606
AdeI	CACNNNGTG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	3 cut(s)	85, 209, 614
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	119, 227
AluI	AGCT	2 cut(s)	119, 227
Alw21I	GWGCWC	2 cut(s)	8, 82
Alw26I	GTCTC	2 cut(s)	47, 136
Alw44I	GTGCAC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	3 cut(s)	22, 257, 291
ApaI	GGGCCC	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	406
AseI	ATTAAT	1 cut(s)	339
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	22, 23, 291, 595
AsuHPI	GGTGA	2 cut(s)	101, 175
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	595
AvrII	CCTAGG	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	26, 82
BanII	GRGCYC	2 cut(s)	26, 438
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	2 cut(s)	8, 82
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	359, 583
BciT130I	CCWGG	3 cut(s)	87, 211, 616
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	47, 136
BfaI	CTAG	2 cut(s)	147, 288
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	3 cut(s)	407, 419, 422
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	3 cut(s)	408, 420, 423
Bme1390I	CCNGG	3 cut(s)	87, 211, 616
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	4 cut(s)	22, 23, 291, 595
BmiI	GGNNCC	5 cut(s)	23, 24, 248, 435, 465
BmrFI	CCNGG	3 cut(s)	87, 211, 616
BpiI	GAAGAC	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	47, 136
BsaJI	CCNNGG	3 cut(s)	209, 210, 287
Bse1I	ACTGG	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	87, 211, 616
BseDI	CCNNGG	3 cut(s)	209, 210, 287
BseGI	GGATG	3 cut(s)	370, 594, 652
BseMII	CTCAG	4 cut(s)	58, 134, 146, 522
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	2 cut(s)	26, 82
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	3 cut(s)	24, 259, 293
BsiHKAI	GWGCWC	2 cut(s)	8, 82
BsiHKCI	CYCGRG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	47, 136
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	24, 259, 293
Bso31I	GGTCTC	2 cut(s)	47, 136
BsoBI	CYCGRG	1 cut(s)	9
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	4 cut(s)	8, 26, 82, 438
Bsp143I	GATC	3 cut(s)	67, 169, 559
BspACI	CCGC	3 cut(s)	397, 419, 422
BspANI	GGCC	3 cut(s)	24, 259, 293
BspCNI	CTCAG	4 cut(s)	57, 133, 145, 523
BspLI	GGNNCC	5 cut(s)	23, 24, 248, 435, 465
BspTNI	GGTCTC	2 cut(s)	47, 136
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	209, 210, 287
BssMI	GATC	3 cut(s)	67, 169, 559
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	3 cut(s)	87, 211, 616
Bst6I	CTCTTC	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	152, 399
BstDEI	CTNAG	4 cut(s)	44, 120, 132, 531
BstF5I	GGATG	3 cut(s)	370, 594, 652
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	3 cut(s)	70, 172, 562
BstMAI	GTCTC	2 cut(s)	47, 136
BstMBI	GATC	3 cut(s)	67, 169, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 415, 545
BstNI	CCWGG	3 cut(s)	87, 211, 616
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	3 cut(s)	85, 209, 614
BstSLI	GKGCMC	2 cut(s)	26, 82
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	24, 259, 293
BtsCI	GGATG	3 cut(s)	370, 594, 652
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	152, 399
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	4 cut(s)	22, 23, 291, 595
CsiI	ACCWGGT	1 cut(s)	85
CviAII	CATG	4 cut(s)	460, 545, 563, 663
DdeI	CTNAG	4 cut(s)	44, 120, 132, 531
DpnI	GATC	3 cut(s)	69, 171, 561
DpnII	GATC	3 cut(s)	67, 169, 559
DraIII	CACNNNGTG	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	26, 438
Eco31I	GGTCTC	2 cut(s)	47, 136
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	3 cut(s)	99, 243, 606
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	9
EcoO109I	RGGNCCY	2 cut(s)	22, 23
EcoRII	CCWGG	3 cut(s)	85, 209, 614
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	2 cut(s)	26, 438
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	4 cut(s)	463, 548, 566, 666
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	4 cut(s)	459, 544, 562, 662
FauI	CCCGC	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	3 cut(s)	407, 419, 422
FokI	GGATG	3 cut(s)	377, 601, 659
FriOI	GRGCYC	2 cut(s)	26, 438
Fsp4HI	GCNGC	3 cut(s)	407, 419, 422
FspBI	CTAG	2 cut(s)	147, 288
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	407, 419, 422
HaeIII	GGCC	3 cut(s)	24, 259, 293
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	463, 548, 566, 666
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	94, 100, 275, 533
HphI	GGTGA	2 cut(s)	101, 175
Hpy166II	GTNNAC	2 cut(s)	80, 486
Hpy188I	TCNGA	4 cut(s)	99, 280, 625, 658
Hpy188III	TCNNGA	5 cut(s)	104, 139, 173, 240, 530
Hpy8I	GTNNAC	2 cut(s)	80, 486
HpyAV	CCTTC	5 cut(s)	36, 45, 237, 246, 526
HpyCH4V	TGCA	6 cut(s)	32, 80, 406, 459, 539, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 415, 545
HpyF3I	CTNAG	4 cut(s)	44, 120, 132, 531
Hsp92II	CATG	4 cut(s)	463, 548, 566, 666
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	67, 169, 559
LmnI	GCTCC	2 cut(s)	433, 469
Lsp1109I	GCAGC	1 cut(s)	418
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	2 cut(s)	147, 288
MaeIII	GTNAC	2 cut(s)	126, 497
MalI	GATC	3 cut(s)	69, 171, 561
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	3 cut(s)	67, 169, 559
MboII	GAAGA	4 cut(s)	67, 195, 324, 612
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	4 cut(s)	8, 26, 82, 438
MluCI	AATT	6 cut(s)	62, 235, 340, 382, 604, 650
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	8 cut(s)	100, 141, 169, 249, 469, 537, 559, 586
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	3 cut(s)	11, 458, 567
MspR9I	CCNGG	3 cut(s)	87, 211, 616
MvaI	CCWGG	3 cut(s)	87, 211, 616
MwoI	GCNNNNNNNGC	3 cut(s)	403, 415, 545
NdeII	GATC	3 cut(s)	67, 169, 559
NlaIII	CATG	4 cut(s)	463, 548, 566, 666
NlaIV	GGNNCC	5 cut(s)	23, 24, 248, 435, 465
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	666
OliI	CACNNNNGTG	1 cut(s)	11
PasI	CCCWGGG	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	259
PciI	ACATGT	1 cut(s)	662
PfeI	GAWTC	3 cut(s)	94, 100, 275
PkrI	GCNGC	3 cut(s)	408, 420, 423
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	662
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	85, 209, 614
PspGI	CCWGG	3 cut(s)	85, 209, 614
PspN4I	GGNNCC	5 cut(s)	23, 24, 248, 435, 465
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	4 cut(s)	22, 23, 291, 595
PsuI	RGATCY	1 cut(s)	67
RseI	CAYNNNNRTG	3 cut(s)	11, 458, 567
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	407, 419, 422
Sau3AI	GATC	3 cut(s)	67, 169, 559
Sau96I	GGNCC	4 cut(s)	22, 23, 291, 595
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	3 cut(s)	87, 211, 616
SduI	GDGCHC	4 cut(s)	8, 26, 82, 438
SexAI	ACCWGGT	1 cut(s)	85
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	3 cut(s)	11, 458, 567
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	6 cut(s)	62, 235, 340, 382, 604, 650
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	3 cut(s)	397, 419, 422
SspMI	CTAG	2 cut(s)	147, 288
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	85, 209, 614
StyI	CCWWGG	1 cut(s)	287
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	6 cut(s)	62, 235, 340, 382, 604, 650
TauI	GCSGC	2 cut(s)	421, 424
TfiI	GAWTC	3 cut(s)	94, 100, 275
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	75, 626, 663
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	420
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	339
XceI	RCATGY	1 cut(s)	666
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	147, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.