Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

37996360 .. 37998653

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAACCAAAACATAGTGGTTATATATCAGGGAGAATCTGTTTATCAACTGTTTATATGAAATTTTATGTTGTGAGTTCTCGAATAAGCTTGCTTTGGACCTGTTTAGATATTCAGGATTGTATTTTGAAGATAATGAATCAGCTTCTTAGCATGAGCATAGGAGGATCAAGTTACTTTCAACAAGTGAATGCCAGTGAGGCTGAAAGATCGAGAAAATTGACAAGGGTAGTACATTTGGACCTTAACCATCCACCTCCTAGTGAGAACGTGGCTCTAGCTGCTCCTTCGAGTGGCCAACCTCAACAACAATCATCGGACGCTCCTGATGATGAATGTCTAATCATCTCACCACGGAAGTTTGAAGAGGCCATGAATAATTCCCAGAGAAATCCGTCTCGCAGATTGAGAAGCAATATAGAAGATTTTACTGAAGTTGGGGTTGCACAATCGTTTGATTTTGTATCAACAGACCTAATAACATGGGGGATCTCCTTTGGCCGACTTGGAACTGTCAACAGAGTGATTTCCTTGAACAATGAAGTTCTTAACAAAACCAAAGATACTGCAACCAGTATCCCCATGGATCCAATAGAGCCCCAGGCCCAGGGTGAGCTTGACGCACCTGCTCTCTCTTGTGTAATCTGCATGGGCCAATTGGTTGAAGAAACATCAACGAAGTGCGGCCACATCTTCTGCAAGACGTGTATTGAAAAAGCAATAGCTACTCAACACAAATGCCCTAACTGCAGGCGTAAACTTAGAAAGCGAGACATCTTCAGGGTCCACCTTCCATACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

268

Amino Acids

29.95

Weight (kDa)

7.99

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	212 - 251	1.8e-09	Ring finger domain
zf-C3HC4_3	PF13920	212 - 256	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	213 - 250	8.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	213 - 250	6e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
AciI	CCGC	1 cut(s)	684
AclWI	GGATC	4 cut(s)	175, 497, 581, 594
AcoI	YGGCCR	3 cut(s)	295, 499, 685
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	453, 763
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	293, 607
AflIII	ACRYGT	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	130, 182, 365, 535, 665, 713
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	2 cut(s)	600, 606
AluBI	AGCT	5 cut(s)	90, 145, 281, 616, 725
AluI	AGCT	5 cut(s)	90, 145, 281, 616, 725
Alw26I	GTCTC	2 cut(s)	402, 765
AlwI	GGATC	4 cut(s)	175, 497, 581, 594
AoxI	GGCC	6 cut(s)	295, 369, 499, 603, 652, 685
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	5 cut(s)	99, 241, 604, 652, 784
AsuHPI	GGTGA	2 cut(s)	342, 623
AvaII	GGWCC	3 cut(s)	99, 241, 784
BalI	TGGCCA	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	602, 608
BciVI	GTATCC	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	402, 765
BfaI	CTAG	2 cut(s)	261, 278
BfmI	CTRYAG	1 cut(s)	748
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	282, 685
BlsI	GCNGC	2 cut(s)	283, 686
Bme1390I	CCNGG	2 cut(s)	602, 608
Bme18I	GGWCC	3 cut(s)	99, 241, 784
BmgBI	CACGTC	1 cut(s)	705
BmgT120I	GGNCC	5 cut(s)	99, 241, 604, 652, 784
BmiI	GGNNCC	3 cut(s)	6, 588, 785
BmrFI	CCNGG	2 cut(s)	602, 608
BsaJI	CCNNGG	5 cut(s)	353, 582, 600, 606, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 607
Bse1I	ACTGG	3 cut(s)	195, 573, 801
BseBI	CCWGG	2 cut(s)	602, 608
BseDI	CCNNGG	5 cut(s)	353, 582, 600, 606, 607
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	293, 607
BseNI	ACTGG	3 cut(s)	195, 573, 801
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	6 cut(s)	297, 371, 501, 605, 654, 687
BslI	CCNNNNNNNGG	2 cut(s)	293, 607
BsmAI	GTCTC	2 cut(s)	402, 765
BsmBI	CGTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	6 cut(s)	297, 371, 501, 605, 654, 687
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	167, 209, 489, 586
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	1 cut(s)	684
BspANI	GGCC	6 cut(s)	297, 371, 501, 605, 654, 687
BspLI	GGNNCC	3 cut(s)	6, 588, 785
BspMAI	CTGCAG	1 cut(s)	752
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	4 cut(s)	175, 497, 581, 594
BsrI	ACTGG	3 cut(s)	195, 573, 801
BssECI	CCNNGG	5 cut(s)	353, 582, 600, 606, 607
BssMI	GATC	4 cut(s)	167, 209, 489, 586
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	602, 608
Bst4CI	ACNGT	2 cut(s)	52, 514
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	92, 752
BstDEI	CTNAG	2 cut(s)	149, 761
BstDSI	CCRYGG	2 cut(s)	353, 582
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	170, 212, 492, 589
BstMAI	GTCTC	2 cut(s)	402, 765
BstMBI	GATC	4 cut(s)	167, 209, 489, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 281, 747
BstNI	CCWGG	2 cut(s)	602, 608
BstSCI	CCNGG	2 cut(s)	600, 606
BstSFI	CTRYAG	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	489, 586
BstYI	RGATCY	2 cut(s)	489, 586
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	6 cut(s)	297, 371, 501, 605, 654, 687
BtgI	CCRYGG	2 cut(s)	353, 582
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	92, 752
Cfr13I	GGNCC	5 cut(s)	99, 241, 604, 652, 784
CseI	GACGC	2 cut(s)	329, 629
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	5 cut(s)	154, 373, 483, 583, 649
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	149, 761
DpnI	GATC	4 cut(s)	169, 211, 491, 588
DpnII	GATC	4 cut(s)	167, 209, 489, 586
EaeI	YGGCCR	3 cut(s)	295, 499, 685
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	99, 241, 784
Eco57I	CTGAAG	2 cut(s)	453, 763
EcoRII	CCWGG	2 cut(s)	600, 606
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	5 cut(s)	157, 376, 486, 586, 652
FatI	CATG	5 cut(s)	153, 372, 482, 582, 648
Fnu4HI	GCNGC	2 cut(s)	282, 685
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	2 cut(s)	282, 685
FspBI	CTAG	2 cut(s)	261, 278
GluI	GCNGC	2 cut(s)	282, 685
HaeIII	GGCC	6 cut(s)	297, 371, 501, 605, 654, 687
HgaI	GACGC	2 cut(s)	329, 629
Hin1II	CATG	5 cut(s)	157, 376, 486, 586, 652
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	2 cut(s)	36, 139
HphI	GGTGA	2 cut(s)	342, 623
Hpy166II	GTNNAC	3 cut(s)	517, 758, 787
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	81, 116, 213, 326
Hpy8I	GTNNAC	3 cut(s)	517, 758, 787
HpyAV	CCTTC	2 cut(s)	297, 800
HpyCH4III	ACNGT	2 cut(s)	52, 514
HpyCH4IV	ACGT	2 cut(s)	270, 704
HpyCH4V	TGCA	5 cut(s)	446, 569, 648, 699, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 281, 747
HpyF3I	CTNAG	2 cut(s)	149, 761
HpySE526I	ACGT	2 cut(s)	270, 704
Hsp92II	CATG	5 cut(s)	157, 376, 486, 586, 652
Kzo9I	GATC	4 cut(s)	167, 209, 489, 586
LmnI	GCTCC	2 cut(s)	289, 328
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	261, 278
MaeII	ACGT	2 cut(s)	270, 704
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	169, 211, 491, 588
MboI	GATC	4 cut(s)	167, 209, 489, 586
MboII	GAAGA	6 cut(s)	142, 377, 434, 677, 685, 769
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	2 cut(s)	489, 586
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	4 cut(s)	62, 218, 379, 656
MluNI	TGGCCA	1 cut(s)	297
MnlI	CCTC	5 cut(s)	158, 193, 267, 312, 361
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	246, 549, 805
Msp20I	TGGCCA	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	602, 608
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	602, 608
MwoI	GCNNNNNNNGC	3 cut(s)	200, 281, 747
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	4 cut(s)	167, 209, 489, 586
NlaIII	CATG	5 cut(s)	157, 376, 486, 586, 652
NlaIV	GGNNCC	3 cut(s)	6, 588, 785
PaqCI	CACCTGC	1 cut(s)	634
PasI	CCCWGGG	1 cut(s)	607
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	36, 139
PkrI	GCNGC	2 cut(s)	283, 686
Psp6I	CCWGG	2 cut(s)	600, 606
PspGI	CCWGG	2 cut(s)	600, 606
PspN4I	GGNNCC	3 cut(s)	6, 588, 785
PspPI	GGNCC	5 cut(s)	99, 241, 604, 652, 784
PstI	CTGCAG	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	489, 586
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	246, 549, 805
SatI	GCNGC	2 cut(s)	282, 685
Sau3AI	GATC	4 cut(s)	167, 209, 489, 586
Sau96I	GGNCC	5 cut(s)	99, 241, 604, 652, 784
ScrFI	CCNGG	2 cut(s)	602, 608
SduI	GDGCHC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	748
SinI	GGWCC	3 cut(s)	99, 241, 784
Sse9I	AATT	4 cut(s)	62, 218, 379, 656
SsiI	CCGC	1 cut(s)	684
SspMI	CTAG	2 cut(s)	261, 278
StyD4I	CCNGG	2 cut(s)	600, 606
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	52, 514
TaiI	ACGT	2 cut(s)	273, 707
TaqI	TCGA	3 cut(s)	82, 212, 290
TasI	AATT	4 cut(s)	62, 218, 379, 656
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	36, 139
Tru1I	TTAA	3 cut(s)	246, 549, 805
Tru9I	TTAA	3 cut(s)	246, 549, 805
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	74, 152, 348, 389, 555
TspGWI	ACGGA	2 cut(s)	370, 384
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	3 cut(s)	99, 241, 784
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XspI	CTAG	2 cut(s)	261, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.