Prupe.1G160800_v2.0.a1

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001134
Physical Location & Seq
Forward (+)
12827013 .. 12830948
3936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G160800.1

Sequence Viewer

Length: 687 bp
ATGGCCTCACACTCATTAGGGCAATTTACAGAAGGGAAAGTGAGGAATTCTCAAAGGGGGAAGATGCCACTAACTGTGGACCTCAACTATCCAGCTCCTTGTGAGGACATGGTTCTAAATGCCAGATTTACTTGGGACAATAGTCAACAAGGTCAAGATGAAGCACATAGTCGGTCAGAACCACAAGCTTCACATGATTGTGAGGTCATTGATGATGAAGTTGTCATAATTTCCCCAAGGATATATGCCCAAGCCAAGAATAACTCCAGTAGAAACCTGGAGGTGCGGGATGTGCCTCCTACAAATACAGAACAGCATAATGGCCTTTCAGATGTGGCTGCTCAAACACATCTAATTCCTCTTCATTGCCACAAGCGTAGAAGAACTTTACGAAATCAAGCAGTTTTAAATTGGGAGCTCCACTTCAGCTCTGAAGACAGTGATGCAAACAAGACAAAGGAAGTGCCTATTCCAGAACTTCCTCAGAGCACGCCACCTCCAGAGACACCCGCCTTCAGCTGCCCAATATGCTTGGGCCCGTTGAGCGAAGAGACATCAACAAAGTGTGGTCACATCTTCTGCAAGATGTGTATTGAAGCCTCAATAAAAGTTCAGCACAAATGCCCAACTTGTCGTAAAAGGCTTAGAATGAAAGACACTATAAGGGTCTACCTTCCTACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
zf-C3HC4_2 zf-RING_2

Protein Analysis

229

Amino Acids

25.72

Weight (kDa)

7.12

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 669
AciI CCGC 2 cut(s) 286, 510
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 3 cut(s) 409, 453, 499
AgsI TTSAA 1 cut(s) 596
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 5 cut(s) 95, 188, 418, 429, 519
AluI AGCT 5 cut(s) 95, 188, 418, 429, 519
Alw21I GWGCWC 2 cut(s) 420, 491
Alw26I GTCTC 2 cut(s) 497, 545
AoxI GGCC 3 cut(s) 3, 322, 535
ApaI GGGCCC 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 338, 519
ApoI RAATTY 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 79, 535, 536
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 2 cut(s) 420, 539
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 2 cut(s) 420, 491
BbvI GCAGC 2 cut(s) 325, 506
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 497, 545
BisI GCNGC 2 cut(s) 339, 520
BlsI GCNGC 2 cut(s) 340, 521
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 79, 535, 536
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 54, 433
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 3 cut(s) 250, 299, 483
BsaJI CCNNGG 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 2 cut(s) 325, 506
BshFI GGCC 3 cut(s) 5, 324, 537
BsiHKAI GWGCWC 2 cut(s) 420, 491
BslFI GGGAC 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 497, 545
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 5, 324, 537
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 3 cut(s) 420, 491, 539
BspACI CCGC 2 cut(s) 286, 510
BspANI GGCC 3 cut(s) 5, 324, 537
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 76, 440
Bst6I CTCTTC 2 cut(s) 366, 543
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 483, 644
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 497, 545
BstMWI GCNNNNNNNGC 3 cut(s) 292, 528, 543
BstNI CCWGG 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 2 cut(s) 325, 506
BstV2I GAAGAC 1 cut(s) 441
BsuRI GGCC 3 cut(s) 5, 324, 537
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 79, 535, 536
CviAII CATG 2 cut(s) 109, 194
DdeI CTNAG 2 cut(s) 483, 644
DraI TTTAAA 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 366, 543
EarI CTCTTC 2 cut(s) 366, 543
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 2 cut(s) 420, 539
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 3 cut(s) 409, 453, 499
EcoICRI GAGCTC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 2 cut(s) 420, 539
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 2 cut(s) 112, 197
FaiI YATR 9 cut(s) 110, 168, 195, 227, 244, 246, 318, 529, 662
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 108, 193
FauI CCCGC 2 cut(s) 279, 517
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 2 cut(s) 339, 520
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 2 cut(s) 420, 539
Fsp4HI GCNGC 2 cut(s) 339, 520
GluI GCNGC 2 cut(s) 339, 520
GsuI CTGGAG 3 cut(s) 250, 299, 483
HaeIII GGCC 3 cut(s) 5, 324, 537
Hin1II CATG 2 cut(s) 112, 197
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 79, 146, 670
Hpy188I TCNGA 4 cut(s) 178, 331, 433, 486
Hpy188III TCNNGA 3 cut(s) 155, 473, 500
Hpy8I GTNNAC 3 cut(s) 79, 146, 670
HpyAV CCTTC 3 cut(s) 26, 523, 683
HpyCH4III ACNGT 2 cut(s) 76, 440
HpyCH4V TGCA 2 cut(s) 446, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 528, 543
HpyF3I CTNAG 2 cut(s) 483, 644
Hsp92II CATG 2 cut(s) 112, 197
LmnI GCTCC 3 cut(s) 100, 415, 423
LpnPI CCDG 7 cut(s) 105, 136, 263, 280, 290, 486, 513
Lsp1109I GCAGC 2 cut(s) 325, 506
LweI GCATC 2 cut(s) 54, 433
MaeIII GTNAC 1 cut(s) 569
MboII GAAGA 6 cut(s) 73, 353, 393, 446, 560, 568
MhlI GDGCHC 3 cut(s) 420, 491, 539
MluCI AATT 5 cut(s) 23, 46, 228, 354, 409
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 292, 528, 543
NlaIII CATG 2 cut(s) 112, 197
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 569
PkrI GCNGC 2 cut(s) 340, 521
PshAI GACNNNNGTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 537
PspOMI GGGCCC 1 cut(s) 535
PspPI GGNCC 3 cut(s) 79, 535, 536
PvuII CAGCTG 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 2 cut(s) 339, 520
Sau96I GGNCC 3 cut(s) 79, 535, 536
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 3 cut(s) 420, 491, 539
SfaNI GCATC 2 cut(s) 54, 433
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 5 cut(s) 23, 46, 228, 354, 409
SsiI CCGC 2 cut(s) 286, 510
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 76, 440
TaqII GACCGA 1 cut(s) 162
TasI AATT 5 cut(s) 23, 46, 228, 354, 409
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 338, 519
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 4 cut(s) 174, 231, 353, 665
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.