Prupe.1G161000_v2.0.a1

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001134
Physical Location & Seq
Forward (+)
12854534 .. 12858351
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G161000.2

Sequence Viewer

Length: 822 bp
ATGGGTTTTGTAATACCAAGAAAGCAAGAGAGGCCAACACTTTGCTCAATATATTATCTTCTCGTCTCATCCACCGCTCTCTCTATTGGGCGTTCTTTCACATTGAATTTCTCTCCCTACACACCAGAGGTTTTTGTTTCAAAACTGATAAATCAGCTTGTTAGCATGAGCATAGAAGGATCTAGTGAAGTTCAACGGTGGAATGTGAGAGATGTTGCAATGGGAAGGATAATAGATTTGGACCTTAATCATCCACCTCCTAATGAGAACATGGCTCTACCTGGTTCTTTGGGACTACAAGTTCAAGGAATTGGGCATTATCAAGGACAAGCTACAGCTGCAGCGGATTTTGTGGATGATGAAGTTGTTATAATCTCACCAAGGAAATTTGCAGAAGCCACGAATAATTCACGACAAAATCCTTCTCGGAGAAGCCGTAGAGTCATAGAAGGTCTTTCTGAAGGTGCAGAATTCTATACCAGGCTTTCAGAATTGACAAATTTCCGTGCCTTTAGCCAACTTGGAGCTTCCAACTGGGAGGTTTCGGTCAATGTTGATGTTCGTAACAAACCAGAGTATACTGCAACTAACGTTCCCATGCCTCCAGTTGTGCCCCAGAGTGAGTTCTTGCCAGAGGCACCTGGTTTCACTTGTGCAATCTGCATAGGCCAGTTGATTGAAGAAACATCGACAAAGTGTGGTCACATCTTCTGCAAGAAGTGCATTGAGAAAGCCATAGCTACTCAACACAAATGCCCTACCTGCAGGCATAAACTTAGAAAGCGAGATATCCTCAGGATCTACCTTCCAAACAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_2

Protein Analysis

274

Amino Acids

30.45

Weight (kDa)

8.61

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 637
AccBSI CCGCTC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 578
AciI CCGC 2 cut(s) 75, 344
AclI AACGTT 1 cut(s) 591
AclWI GGATC 2 cut(s) 187, 806
AcsI RAATTY 4 cut(s) 106, 386, 470, 499
AcuI CTGAAG 1 cut(s) 480
AgsI TTSAA 5 cut(s) 106, 141, 194, 305, 680
AjnI CCWGG 3 cut(s) 280, 479, 640
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 5 cut(s) 157, 332, 338, 527, 740
AluI AGCT 5 cut(s) 157, 332, 338, 527, 740
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 187, 806
AoxI GGCC 2 cut(s) 32, 667
ApeKI GCWGC 2 cut(s) 338, 341
ApoI RAATTY 4 cut(s) 106, 386, 470, 499
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 369
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 615
BanI GGYRCC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 325, 353
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 3 cut(s) 282, 481, 642
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 3 cut(s) 333, 339, 763
BfuAI ACCTGC 1 cut(s) 770
BisI GCNGC 2 cut(s) 339, 342
BlsI GCNGC 2 cut(s) 340, 343
Bme1390I CCNGG 3 cut(s) 282, 481, 642
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 3 cut(s) 282, 481, 642
BmrI ACTGGG 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 777, 809
BpmI CTGGAG 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse1I ACTGG 3 cut(s) 539, 605, 670
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 282, 481, 642
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 3 cut(s) 68, 250, 361
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 808
BseNI ACTGG 3 cut(s) 539, 605, 670
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 2 cut(s) 325, 353
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 2 cut(s) 34, 669
BshNI GGYRCC 1 cut(s) 637
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 2 cut(s) 34, 669
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 2 cut(s) 179, 798
BspACI CCGC 2 cut(s) 75, 344
BspANI GGCC 2 cut(s) 34, 669
BspCNI CTCAG 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 639
BspMAI CTGCAG 2 cut(s) 343, 767
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 2 cut(s) 187, 806
BspT107I GGYRCC 1 cut(s) 637
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 3 cut(s) 539, 605, 670
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 2 cut(s) 179, 798
BssNAI GTATAC 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 380
Bst1107I GTATAC 1 cut(s) 579
Bst2UI CCWGG 3 cut(s) 282, 481, 642
Bst4CI ACNGT 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 2 cut(s) 776, 794
BstF5I GGATG 3 cut(s) 68, 250, 361
BstKTI GATC 2 cut(s) 182, 801
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 179, 798
BstMWI GCNNNNNNNGC 4 cut(s) 31, 338, 720, 762
BstNI CCWGG 3 cut(s) 282, 481, 642
BstSCI CCNGG 3 cut(s) 280, 479, 640
BstSFI CTRYAG 3 cut(s) 333, 339, 763
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 325, 353
BstX2I RGATCY 2 cut(s) 179, 798
BstYI RGATCY 2 cut(s) 179, 798
BstZ17I GTATAC 1 cut(s) 579
Bsu36I CCTNAGG 1 cut(s) 794
BsuRI GGCC 2 cut(s) 34, 669
BtsCI GGATG 3 cut(s) 68, 250, 361
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 241
CsiI ACCWGGT 2 cut(s) 280, 640
CviAII CATG 3 cut(s) 166, 271, 598
DdeI CTNAG 2 cut(s) 776, 794
DpnI GATC 2 cut(s) 181, 800
DpnII GATC 2 cut(s) 179, 798
Eco130I CCWWGG 1 cut(s) 380
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 794
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 280, 479, 640
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 169, 274, 601
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 165, 270, 597
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 339, 342
FokI GGATG 3 cut(s) 55, 237, 368
Fsp4HI GCNGC 2 cut(s) 339, 342
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 339, 342
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 2 cut(s) 34, 669
Hin1II CATG 3 cut(s) 169, 274, 601
HinfI GANTC 1 cut(s) 441
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 3 cut(s) 429, 460, 490
Hpy188III TCNNGA 2 cut(s) 411, 796
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 6 cut(s) 170, 219, 432, 443, 455, 815
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 591
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 338, 720, 762
HpyF3I CTNAG 2 cut(s) 776, 794
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 3 cut(s) 169, 274, 601
Kzo9I GATC 2 cut(s) 179, 798
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 325, 353
MabI ACCWGGT 2 cut(s) 280, 640
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 563, 701
MalI GATC 2 cut(s) 181, 800
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 179, 798
MboII GAAGA 3 cut(s) 50, 692, 700
MflI RGATCY 2 cut(s) 179, 798
MhlI GDGCHC 1 cut(s) 615
MluCI AATT 7 cut(s) 106, 309, 386, 406, 470, 491, 499
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 7 cut(s) 24, 121, 267, 532, 612, 628, 803
MseI TTAA 2 cut(s) 246, 820
MspA1I CMGCKG 2 cut(s) 338, 344
MspR9I CCNGG 3 cut(s) 282, 481, 642
MvaI CCWGG 3 cut(s) 282, 481, 642
MwoI GCNNNNNNNGC 4 cut(s) 31, 338, 720, 762
NdeII GATC 2 cut(s) 179, 798
NlaIII CATG 3 cut(s) 169, 274, 601
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PkrI GCNGC 2 cut(s) 340, 343
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 591
Psp6I CCWGG 3 cut(s) 280, 479, 640
PspGI CCWGG 3 cut(s) 280, 479, 640
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 241
PstI CTGCAG 2 cut(s) 343, 767
PsuI RGATCY 2 cut(s) 179, 798
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 246, 820
SatI GCNGC 2 cut(s) 339, 342
Sau3AI GATC 2 cut(s) 179, 798
Sau96I GGNCC 1 cut(s) 241
SbfI CCTGCAGG 1 cut(s) 767
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 282, 481, 642
SdaI CCTGCAGG 1 cut(s) 767
SduI GDGCHC 1 cut(s) 615
SexAI ACCWGGT 2 cut(s) 280, 640
SfcI CTRYAG 3 cut(s) 333, 339, 763
SinI GGWCC 1 cut(s) 241
Sse8387I CCTGCAGG 1 cut(s) 767
Sse9I AATT 7 cut(s) 106, 309, 386, 406, 470, 491, 499
SsiI CCGC 2 cut(s) 75, 344
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 280, 479, 640
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 594
TaqI TCGA 1 cut(s) 689
TaqII GACCGA 1 cut(s) 535
TasI AATT 7 cut(s) 106, 309, 386, 406, 470, 491, 499
Tru1I TTAA 2 cut(s) 246, 820
Tru9I TTAA 2 cut(s) 246, 820
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 2 cut(s) 338, 341
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 4 cut(s) 106, 386, 470, 499
XmiI GTMKAC 1 cut(s) 578
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.