Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

19346087 .. 19347826

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGCACTCGGGGGGCCAGGGCGCCACATGCAAGAGGGCGGCGAAGAAAGAATGAGTTGAACTTGGACCTCAATAGTGCCCCACCTGGTGACAGTCGGGAACAGGAGGGAACTTCAACTCAGTCAGTGCCTCAGAATAATCAAGCGACTTTGCAAGTTCAGCCCATACCACCTAATACGATTGATGTTGAGGCTATTGATGATGATGTTATTGAATCCAGCCCCACGGCTTTTGCTGAGGCTAAAAACAATTCCAGAAGGAACCGGAGGACTGTTGTTGATGTGGAATCAGAACGGACGGCTAGGGTCACTCAGAACAAGCGCAGAAGAGTTGGACCAAACCAAACAATTATTAATTGTGATTTTTACATAAATCTGGAAAGCAACAGCAACTCCACCTCCACCTCCACGAAACAGAATGTTACACAGCCGCCTCCACCACCACCACCACCAAAGGAGCCCACCTTTACCTGTCCCATTTGCATGGCTCCTTTAGTTGAGGAGATGTCAACAAAATGTGGCCACATTTTCTGTAAGGCTTGCATTAAAGTTGCAATAGGTGCGCAGGGCAAATGCCCTACATGTAGGAGAAAAGGTTATGAAAGGTGGTTTTTGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

208

Amino Acids

23.03

Weight (kDa)

9.25

Isoelectric Point (pI)

78.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	40, 431
AcoI	YGGCCR	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	61, 117, 215
AjnI	CCWGG	2 cut(s)	17, 85
Alw21I	GWGCWC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	15, 520
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	3 cut(s)	25, 324, 565
AspS9I	GGNCC	3 cut(s)	15, 67, 335
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	67, 335
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	237
BceAI	ACGGC	2 cut(s)	243, 315
BciT130I	CCWGG	2 cut(s)	19, 87
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	2 cut(s)	41, 431
BlsI	GCNGC	2 cut(s)	42, 432
Bme1390I	CCNGG	2 cut(s)	19, 87
Bme18I	GGWCC	2 cut(s)	67, 335
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	15, 67, 335
BmiI	GGNNCC	5 cut(s)	16, 24, 263, 459, 489
BmrFI	CCNGG	2 cut(s)	19, 87
Bpu10I	CCTNAGC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	18, 225
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	6 cut(s)	377, 383, 407, 413, 580, 610
BseBI	CCWGG	2 cut(s)	19, 87
BseDI	CCNNGG	2 cut(s)	18, 225
BseMII	CTCAG	4 cut(s)	134, 146, 228, 326
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	17, 522
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	17, 522
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	8, 82, 462
BspACI	CCGC	2 cut(s)	40, 431
BspANI	GGCC	2 cut(s)	17, 522
BspCNI	CTCAG	4 cut(s)	133, 145, 229, 325
BspLI	GGNNCC	5 cut(s)	16, 24, 263, 459, 489
BspT107I	GGYRCC	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	18, 225
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	19, 87
Bst4CI	ACNGT	2 cut(s)	95, 274
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	4 cut(s)	120, 132, 237, 312
BstDSI	CCRYGG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	3 cut(s)	25, 324, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 160, 560
BstNI	CCWGG	2 cut(s)	19, 87
BstNSI	RCATGY	2 cut(s)	32, 585
BstSCI	CCNGG	2 cut(s)	17, 85
BstSLI	GKGCMC	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	17, 522
BtgI	CCRYGG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	3 cut(s)	25, 324, 565
Cfr13I	GGNCC	3 cut(s)	15, 67, 335
CsiI	ACCWGGT	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	3 cut(s)	29, 484, 582
DdeI	CTNAG	4 cut(s)	120, 132, 237, 312
DinI	GGCGCC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	67, 335
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	17, 85
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
FaeI	CATG	3 cut(s)	32, 487, 585
FaiI	YATR	6 cut(s)	30, 167, 371, 485, 583, 600
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	3 cut(s)	28, 483, 581
Fnu4HI	GCNGC	2 cut(s)	41, 431
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	41, 431
FspBI	CTAG	1 cut(s)	303
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	3 cut(s)	24, 323, 564
GluI	GCNGC	2 cut(s)	41, 431
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	17, 522
HapII	CCGG	1 cut(s)	265
HhaI	GCGC	3 cut(s)	25, 324, 565
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	32, 487, 585
Hin6I	GCGC	3 cut(s)	23, 322, 563
HinP1I	GCGC	3 cut(s)	23, 322, 563
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	2 cut(s)	215, 287
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	135, 292, 315
Hpy188III	TCNNGA	3 cut(s)	98, 255, 377
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	95, 274
HpyCH4V	TGCA	5 cut(s)	32, 154, 483, 543, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 160, 560
HpyF3I	CTNAG	4 cut(s)	120, 132, 237, 312
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	32, 487, 585
HspAI	GCGC	3 cut(s)	23, 322, 563
KasI	GGCGCC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	457, 493
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	89, 307, 421
MboII	GAAGA	2 cut(s)	57, 339
MhlI	GDGCHC	3 cut(s)	8, 82, 462
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	3 cut(s)	250, 348, 355
MluNI	TGGCCA	1 cut(s)	522
Mly113I	GGCGCC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	313
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	2 cut(s)	354, 546
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	19, 87
MvaI	CCWGG	2 cut(s)	19, 87
MwoI	GCNNNNNNNGC	3 cut(s)	29, 160, 560
NarI	GGCGCC	1 cut(s)	23
NlaIII	CATG	3 cut(s)	32, 487, 585
NlaIV	GGNNCC	5 cut(s)	16, 24, 263, 459, 489
NmuCI	GTSAC	2 cut(s)	89, 307
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	2 cut(s)	32, 585
PciI	ACATGT	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	215, 287
PkrI	GCNGC	2 cut(s)	42, 432
PluTI	GGCGCC	1 cut(s)	26
PscI	ACATGT	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	17, 85
PspGI	CCWGG	2 cut(s)	17, 85
PspN4I	GGNNCC	5 cut(s)	16, 24, 263, 459, 489
PspPI	GGNCC	3 cut(s)	15, 67, 335
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	354, 546
SatI	GCNGC	2 cut(s)	41, 431
Sau96I	GGNCC	3 cut(s)	15, 67, 335
ScrFI	CCNGG	2 cut(s)	19, 87
SduI	GDGCHC	3 cut(s)	8, 82, 462
SexAI	ACCWGGT	1 cut(s)	85
SfoI	GGCGCC	1 cut(s)	24
SinI	GGWCC	2 cut(s)	67, 335
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	250, 348, 355
SsiI	CCGC	2 cut(s)	40, 431
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	17, 85
TaaI	ACNGT	2 cut(s)	95, 274
TasI	AATT	3 cut(s)	250, 348, 355
TauI	GCSGC	2 cut(s)	43, 433
TfiI	GAWTC	2 cut(s)	215, 287
Tru1I	TTAA	2 cut(s)	354, 546
Tru9I	TTAA	2 cut(s)	354, 546
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	89, 307
Tsp45I	GTSAC	2 cut(s)	89, 307
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	67, 335
VspI	ATTAAT	1 cut(s)	354
XceI	RCATGY	2 cut(s)	32, 585
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.