Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

47475580 .. 47479357

Gene Structure 3778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25486

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGCACTCGGATGGCAAGGGGCCCTTCTGCAAGAACTGGTCTCAGGCGAAGGAAGAATGAATTAGATCTCAATAGTACACCACCTGGTGAGAATCGGAATCAAGAGGGAACTTCAGCTCAGGTGTTACCTCAGGTTGAGAGACCTAGCCAGCCCCCATTGGTGATTGATCTTGAGGCTATTGATGATGATGTTGTCATATCTTCCCCCAGGGCTATTGCTGAAGCTGAAAACAACTCCAGAAGGAACCGAAGGAGGCCTGTGGTTGATTTGGAATCAGAACTGCCTAGGGTCACTCGTCAAAAGCGCAGAAGAGTTGAGCCAAATCAAACAATCATTAATTGCGAACTTTACATAAACTTGGATGGCAATAGCAACTCCAATTCAAAGAATGAGCGGGCTATGCAGCCACCACTGCCGCCGCCGCCGCCACCGCCGCCACCGCCAAAGGAGCCCACCTTTACCTGTCCCATTTGCATGACTCCGTTGGCTGAGGAGATGTCAACAAAATGTGGTCACATTTTCTGTAAGAAGTGCATTAAGGCTGCGATAACTGCACAGGGAAAATGCCCTACCTGTCGGAGAAAAGTAACTGCGAAAGAGCTCATTAGGGTATTCCTTCCTACTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

211

Amino Acids

23.53

Weight (kDa)

9.61

Isoelectric Point (pI)

73.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	155 - 194	8.6e-10	Ring finger domain
zf-C3HC4_3	PF13920	155 - 198	6.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	156 - 193	2.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	156 - 193	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	156 - 191	4.3e-07	RING-type zinc-finger
zf-RING_5	PF14634	156 - 195	1.1e-06	zinc-RING finger domain
zf-C3HC4_4	PF15227	156 - 193	9.4e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	8 cut(s)	397, 419, 422, 425, 428, 434, 437, 443
AcuI	CTGAAG	2 cut(s)	99, 243
AdeI	CACNNNGTG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	85, 209
AluBI	AGCT	3 cut(s)	119, 227, 604
AluI	AGCT	3 cut(s)	119, 227, 604
Alw21I	GWGCWC	2 cut(s)	8, 606
Alw26I	GTCTC	2 cut(s)	47, 136
AoxI	GGCC	2 cut(s)	22, 257
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	406, 545
AseI	ATTAAT	1 cut(s)	339
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	22, 23
AsuHPI	GGTGA	2 cut(s)	101, 175
AvrII	CCTAGG	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	3 cut(s)	26, 456, 606
Bbv12I	GWGCWC	2 cut(s)	8, 606
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	418, 532
BccI	CCATC	2 cut(s)	7, 359
BciT130I	CCWGG	2 cut(s)	87, 211
BcoDI	GTCTC	2 cut(s)	47, 136
BfaI	CTAG	2 cut(s)	147, 288
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	7 cut(s)	407, 419, 422, 425, 428, 437, 546
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	7 cut(s)	408, 420, 423, 426, 429, 438, 547
Bme1390I	CCNGG	2 cut(s)	87, 211
BmgT120I	GGNCC	2 cut(s)	22, 23
BmiI	GGNNCC	4 cut(s)	23, 24, 248, 453
BmrFI	CCNGG	2 cut(s)	87, 211
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	2 cut(s)	120, 492
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	47, 136
BsaJI	CCNNGG	3 cut(s)	209, 210, 287
Bse1I	ACTGG	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	87, 211
BseDI	CCNNGG	3 cut(s)	209, 210, 287
BseGI	GGATG	2 cut(s)	18, 370
BseMII	CTCAG	4 cut(s)	58, 134, 146, 483
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	418, 532
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	24, 259
BsiHKAI	GWGCWC	2 cut(s)	8, 606
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	47, 136
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	24, 259
Bso31I	GGTCTC	2 cut(s)	47, 136
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	4 cut(s)	8, 26, 456, 606
Bsp143I	GATC	2 cut(s)	67, 169
BspACI	CCGC	8 cut(s)	397, 419, 422, 425, 428, 434, 437, 443
BspANI	GGCC	2 cut(s)	24, 259
BspCNI	CTCAG	4 cut(s)	57, 133, 145, 484
BspLI	GGNNCC	4 cut(s)	23, 24, 248, 453
BspTNI	GGTCTC	2 cut(s)	47, 136
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	209, 210, 287
BssMI	GATC	2 cut(s)	67, 169
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	87, 211
Bst6I	CTCTTC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	152, 399
BstDEI	CTNAG	4 cut(s)	44, 120, 132, 492
BstF5I	GGATG	2 cut(s)	18, 370
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	70, 172
BstMAI	GTCTC	2 cut(s)	47, 136
BstMBI	GATC	2 cut(s)	67, 169
BstMWI	GCNNNNNNNGC	9 cut(s)	403, 415, 424, 427, 433, 436, 442, 451, 554
BstNI	CCWGG	2 cut(s)	87, 211
BstSCI	CCNGG	2 cut(s)	85, 209
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	418, 532
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	24, 259
BtsCI	GGATG	2 cut(s)	18, 370
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	152, 399
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	22, 23
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	4 cut(s)	44, 120, 132, 492
DpnI	GATC	2 cut(s)	69, 171
DpnII	GATC	2 cut(s)	67, 169
DraIII	CACNNNGTG	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	3 cut(s)	26, 456, 606
Eco31I	GGTCTC	2 cut(s)	47, 136
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	99, 243
Eco81I	CCTNAGG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	604
EcoO109I	RGGNCCY	2 cut(s)	22, 23
EcoRII	CCWGG	2 cut(s)	85, 209
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	3 cut(s)	26, 456, 606
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	1 cut(s)	481
FaiI	YATR	4 cut(s)	200, 356, 404, 479
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	407, 419, 422, 425, 428, 437, 546
FokI	GGATG	2 cut(s)	25, 377
FriOI	GRGCYC	3 cut(s)	26, 456, 606
Fsp4HI	GCNGC	7 cut(s)	407, 419, 422, 425, 428, 437, 546
FspBI	CTAG	2 cut(s)	147, 288
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	7 cut(s)	407, 419, 422, 425, 428, 437, 546
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	24, 259
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	4 cut(s)	94, 100, 275, 481
HphI	GGTGA	2 cut(s)	101, 175
Hpy166II	GTNNAC	2 cut(s)	80, 504
Hpy188I	TCNGA	4 cut(s)	12, 99, 280, 582
Hpy188III	TCNNGA	4 cut(s)	104, 173, 240, 633
Hpy8I	GTNNAC	2 cut(s)	80, 504
HpyAV	CCTTC	5 cut(s)	36, 45, 237, 246, 629
HpyCH4V	TGCA	5 cut(s)	32, 406, 477, 537, 557
HpyF10VI	GCNNNNNNNGC	9 cut(s)	403, 415, 424, 427, 433, 436, 442, 451, 554
HpyF3I	CTNAG	4 cut(s)	44, 120, 132, 492
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	67, 169
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	418, 532
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	2 cut(s)	147, 288
MaeIII	GTNAC	4 cut(s)	126, 292, 515, 589
MalI	GATC	2 cut(s)	69, 171
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	2 cut(s)	67, 169
MboII	GAAGA	3 cut(s)	67, 195, 324
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	4 cut(s)	8, 26, 456, 606
MluCI	AATT	3 cut(s)	62, 340, 382
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	5 cut(s)	100, 141, 169, 249, 487
MseI	TTAA	2 cut(s)	339, 540
MslI	CAYNNNNRTG	2 cut(s)	11, 476
MspR9I	CCNGG	2 cut(s)	87, 211
MvaI	CCWGG	2 cut(s)	87, 211
MwoI	GCNNNNNNNGC	9 cut(s)	403, 415, 424, 427, 433, 436, 442, 451, 554
NdeII	GATC	2 cut(s)	67, 169
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	4 cut(s)	23, 24, 248, 453
NmuCI	GTSAC	2 cut(s)	292, 515
PasI	CCCWGGG	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	94, 100, 275
PkrI	GCNGC	7 cut(s)	408, 420, 423, 426, 429, 438, 547
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	85, 209
PspGI	CCWGG	2 cut(s)	85, 209
PspN4I	GGNNCC	4 cut(s)	23, 24, 248, 453
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	22, 23
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	11, 476
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	339, 540
SatI	GCNGC	7 cut(s)	407, 419, 422, 425, 428, 437, 546
Sau3AI	GATC	2 cut(s)	67, 169
Sau96I	GGNCC	2 cut(s)	22, 23
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	87, 211
SduI	GDGCHC	4 cut(s)	8, 26, 456, 606
SexAI	ACCWGGT	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	11, 476
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	62, 340, 382
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	8 cut(s)	397, 419, 422, 425, 428, 434, 437, 443
SspMI	CTAG	2 cut(s)	147, 288
SstI	GAGCTC	1 cut(s)	606
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	85, 209
StyI	CCWWGG	1 cut(s)	287
TasI	AATT	3 cut(s)	62, 340, 382
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	5 cut(s)	421, 424, 427, 430, 439
TfiI	GAWTC	3 cut(s)	94, 100, 275
Tru1I	TTAA	2 cut(s)	339, 540
Tru9I	TTAA	2 cut(s)	339, 540
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	2 cut(s)	292, 515
TseI	GCWGC	2 cut(s)	406, 545
Tsp45I	GTSAC	2 cut(s)	292, 515
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	339
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	147, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.