Zinc finger, C3HC4 type (RING finger)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 56 |
| AccB1I | GGYRCC | 3 cut(s) | 84, 162, 429 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 379 |
| AccBSI | CCGCTC | 1 cut(s) | 674 |
| AccI | GTMKAC | 1 cut(s) | 35 |
| AccII | CGCG | 1 cut(s) | 276 |
| AclWI | GGATC | 4 cut(s) | 794, 807, 892, 1214 |
| AcoI | YGGCCR | 3 cut(s) | 228, 1216, 1396 |
| AcsI | RAATTY | 1 cut(s) | 234 |
| AcuI | CTGAAG | 2 cut(s) | 1170, 1474 |
| AcyI | GRCGYC | 2 cut(s) | 24, 304 |
| AfaI | GTAC | 3 cut(s) | 94, 122, 758 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 153, 291, 316, 379, 471, 796 |
| AgsI | TTSAA | 7 cut(s) | 533, 847, 899, 1082, 1252, 1376, 1424 |
| AjiI | CACGTC | 1 cut(s) | 159 |
| AjnI | CCWGG | 2 cut(s) | 112, 225 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 397, 429 |
| AleI | CACNNNNGTG | 2 cut(s) | 157, 212 |
| AluBI | AGCT | 8 cut(s) | 212, 300, 503, 591, 862, 870, 998, 1436 |
| AluI | AGCT | 8 cut(s) | 212, 300, 503, 591, 862, 870, 998, 1436 |
| Alw26I | GTCTC | 3 cut(s) | 311, 1119, 1476 |
| AlwI | GGATC | 4 cut(s) | 794, 807, 892, 1214 |
| Ama87I | CYCGRG | 2 cut(s) | 72, 638 |
| ApeKI | GCWGC | 2 cut(s) | 998, 1436 |
| ApoI | RAATTY | 1 cut(s) | 234 |
| AspLEI | GCGC | 2 cut(s) | 278, 545 |
| AsuC2I | CCSGG | 3 cut(s) | 53, 399, 744 |
| AsuHPI | GGTGA | 7 cut(s) | 160, 165, 430, 466, 584, 596, 1059 |
| AvaI | CYCGRG | 2 cut(s) | 72, 638 |
| AvaII | GGWCC | 5 cut(s) | 55, 110, 820, 958, 1495 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BamHI | GGATCC | 1 cut(s) | 799 |
| BanI | GGYRCC | 3 cut(s) | 84, 162, 429 |
| BanII | GRGCYC | 3 cut(s) | 744, 1317, 1329 |
| BbvI | GCAGC | 2 cut(s) | 985, 1423 |
| BccI | CCATC | 4 cut(s) | 593, 609, 826, 975 |
| BceAI | ACGGC | 3 cut(s) | 16, 449, 761 |
| BciT130I | CCWGG | 2 cut(s) | 114, 227 |
| BciVI | GTATCC | 1 cut(s) | 1304 |
| BcnI | CCSGG | 3 cut(s) | 53, 399, 744 |
| BcoDI | GTCTC | 3 cut(s) | 311, 1119, 1476 |
| BfaI | CTAG | 3 cut(s) | 447, 978, 995 |
| BfmI | CTRYAG | 1 cut(s) | 1459 |
| BfuAI | ACCTGC | 1 cut(s) | 56 |
| BfuI | GTATCC | 1 cut(s) | 1304 |
| BisI | GCNGC | 9 cut(s) | 487, 538, 541, 672, 679, 765, 999, 1396, 1437 |
| BlpI | GCTNAGC | 1 cut(s) | 296 |
| BlsI | GCNGC | 9 cut(s) | 488, 539, 542, 673, 680, 766, 1000, 1397, 1438 |
| Bme1390I | CCNGG | 5 cut(s) | 53, 114, 227, 399, 744 |
| Bme18I | GGWCC | 5 cut(s) | 55, 110, 820, 958, 1495 |
| BmeT110I | CYCGRG | 2 cut(s) | 72, 638 |
| BmgBI | CACGTC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 7 cut(s) | 56, 86, 164, 431, 801, 1305, 1496 |
| BmrFI | CCNGG | 5 cut(s) | 53, 114, 227, 399, 744 |
| BmrI | ACTGGG | 2 cut(s) | 748, 1312 |
| BmsI | GCATC | 1 cut(s) | 259 |
| BmuI | ACTGGG | 2 cut(s) | 748, 1312 |
| BoxI | GACNNNNGTC | 1 cut(s) | 115 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 2 cut(s) | 489, 892 |
| BpuMI | CCSGG | 3 cut(s) | 53, 399, 744 |
| BsaBI | GATNNNNATC | 1 cut(s) | 804 |
| BsaHI | GRCGYC | 2 cut(s) | 24, 304 |
| BsaJI | CCNNGG | 6 cut(s) | 113, 132, 152, 823, 1070, 1299 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 153, 291, 316, 379, 471, 796 |
| Bse1I | ACTGG | 7 cut(s) | 39, 239, 321, 754, 1290, 1318, 1512 |
| Bse8I | GATNNNNATC | 1 cut(s) | 804 |
| BseBI | CCWGG | 2 cut(s) | 114, 227 |
| BseDI | CCNNGG | 6 cut(s) | 113, 132, 152, 823, 1070, 1299 |
| BseGI | GGATG | 6 cut(s) | 95, 250, 281, 581, 720, 967 |
| BseJI | GATNNNNATC | 1 cut(s) | 804 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 153, 291, 316, 379, 471, 796 |
| BseMII | CTCAG | 2 cut(s) | 287, 1115 |
| BseNI | ACTGG | 7 cut(s) | 39, 239, 321, 754, 1290, 1318, 1512 |
| BseRI | GAGGAG | 1 cut(s) | 472 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseX3I | CGGCCG | 1 cut(s) | 1216 |
| BseXI | GCAGC | 2 cut(s) | 985, 1423 |
| BseYI | CCCAGC | 3 cut(s) | 425, 522, 728 |
| Bsh1236I | CGCG | 1 cut(s) | 276 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1219 |
| BshNI | GGYRCC | 3 cut(s) | 84, 162, 429 |
| BsiEI | CGRYCG | 1 cut(s) | 1219 |
| BsiHKCI | CYCGRG | 2 cut(s) | 72, 638 |
| BsiSI | CCGG | 7 cut(s) | 52, 82, 231, 247, 285, 399, 744 |
| BslFI | GGGAC | 1 cut(s) | 504 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 153, 291, 316, 379, 471, 796 |
| BsmAI | GTCTC | 3 cut(s) | 311, 1119, 1476 |
| BsmBI | CGTCTC | 1 cut(s) | 311 |
| BsmFI | GGGAC | 1 cut(s) | 504 |
| BsoBI | CYCGRG | 2 cut(s) | 72, 638 |
| Bsp1286I | GDGCHC | 4 cut(s) | 432, 744, 1317, 1329 |
| Bsp1407I | TGTACA | 1 cut(s) | 92 |
| Bsp143I | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 296 |
| Bsp19I | CCATGG | 2 cut(s) | 823, 1299 |
| BspCNI | CTCAG | 2 cut(s) | 288, 1114 |
| BspFNI | CGCG | 1 cut(s) | 276 |
| BspLI | GGNNCC | 7 cut(s) | 56, 86, 164, 431, 801, 1305, 1496 |
| BspMAI | CTGCAG | 1 cut(s) | 1463 |
| BspMI | ACCTGC | 1 cut(s) | 56 |
| BspPI | GGATC | 4 cut(s) | 794, 807, 892, 1214 |
| BspT107I | GGYRCC | 3 cut(s) | 84, 162, 429 |
| BsrBI | CCGCTC | 1 cut(s) | 674 |
| BsrGI | TGTACA | 1 cut(s) | 92 |
| BsrI | ACTGG | 7 cut(s) | 39, 239, 321, 754, 1290, 1318, 1512 |
| BssECI | CCNNGG | 6 cut(s) | 113, 132, 152, 823, 1070, 1299 |
| BssMI | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| BssNI | GRCGYC | 2 cut(s) | 24, 304 |
| BssT1I | CCWWGG | 2 cut(s) | 823, 1299 |
| Bst2UI | CCWGG | 2 cut(s) | 114, 227 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 1231 |
| Bst6I | CTCTTC | 1 cut(s) | 1077 |
| BstACI | GRCGYC | 2 cut(s) | 24, 304 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1436 |
| BstAUI | TGTACA | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 4 cut(s) | 302, 657, 676, 1463 |
| BstDEI | CTNAG | 4 cut(s) | 296, 866, 1101, 1472 |
| BstDSI | CCRYGG | 4 cut(s) | 152, 823, 1070, 1299 |
| BstF5I | GGATG | 6 cut(s) | 95, 250, 281, 581, 720, 967 |
| BstFNI | CGCG | 1 cut(s) | 276 |
| BstHHI | GCGC | 2 cut(s) | 278, 545 |
| BstKTI | GATC | 5 cut(s) | 196, 516, 802, 887, 1209 |
| BstMAI | GTCTC | 3 cut(s) | 311, 1119, 1476 |
| BstMBI | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| BstMCI | CGRYCG | 1 cut(s) | 1219 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 301, 492, 643, 652, 773, 926, 998, 1436, 1458 |
| BstNI | CCWGG | 2 cut(s) | 114, 227 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 115 |
| BstSCI | CCNGG | 5 cut(s) | 51, 112, 225, 397, 742 |
| BstSFI | CTRYAG | 1 cut(s) | 1459 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstUI | CGCG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 2 cut(s) | 985, 1423 |
| BstX2I | RGATCY | 2 cut(s) | 799, 1206 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 159 |
| BstYI | RGATCY | 2 cut(s) | 799, 1206 |
| BstZI | CGGCCG | 1 cut(s) | 1216 |
| BsuI | GTATCC | 1 cut(s) | 1304 |
| BtgI | CCRYGG | 4 cut(s) | 152, 823, 1070, 1299 |
| BtrI | CACGTC | 1 cut(s) | 159 |
| BtsCI | GGATG | 6 cut(s) | 95, 250, 281, 581, 720, 967 |
| BtsIMutI | CAGTG | 1 cut(s) | 1325 |
| BveI | ACCTGC | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 4 cut(s) | 302, 657, 676, 1463 |
| CfoI | GCGC | 2 cut(s) | 278, 545 |
| CseI | GACGC | 4 cut(s) | 13, 282, 293, 1046 |
| Csp6I | GTAC | 3 cut(s) | 93, 121, 757 |
| CviAII | CATG | 7 cut(s) | 221, 715, 824, 1090, 1200, 1300, 1360 |
| CviQI | GTAC | 3 cut(s) | 93, 121, 757 |
| DdeI | CTNAG | 4 cut(s) | 296, 866, 1101, 1472 |
| DpnI | GATC | 5 cut(s) | 195, 515, 801, 886, 1208 |
| DpnII | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| EaeI | YGGCCR | 3 cut(s) | 228, 1216, 1396 |
| EagI | CGGCCG | 1 cut(s) | 1216 |
| Eam1104I | CTCTTC | 1 cut(s) | 1077 |
| EarI | CTCTTC | 1 cut(s) | 1077 |
| EciI | GGCGGA | 2 cut(s) | 417, 675 |
| EclXI | CGGCCG | 1 cut(s) | 1216 |
| Eco130I | CCWWGG | 2 cut(s) | 823, 1299 |
| Eco147I | AGGCCT | 1 cut(s) | 202 |
| Eco24I | GRGCYC | 3 cut(s) | 744, 1317, 1329 |
| Eco32I | GATATC | 1 cut(s) | 1177 |
| Eco47I | GGWCC | 5 cut(s) | 55, 110, 820, 958, 1495 |
| Eco52I | CGGCCG | 1 cut(s) | 1216 |
| Eco57I | CTGAAG | 2 cut(s) | 1170, 1474 |
| Eco88I | CYCGRG | 2 cut(s) | 72, 638 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoRI | GAATTC | 1 cut(s) | 234 |
| EcoRII | CCWGG | 2 cut(s) | 112, 225 |
| EcoRV | GATATC | 1 cut(s) | 1177 |
| EcoT14I | CCWWGG | 2 cut(s) | 823, 1299 |
| EcoT38I | GRGCYC | 3 cut(s) | 744, 1317, 1329 |
| ErhI | CCWWGG | 2 cut(s) | 823, 1299 |
| Esp3I | CGTCTC | 1 cut(s) | 311 |
| FaeI | CATG | 7 cut(s) | 224, 718, 827, 1093, 1203, 1303, 1363 |
| FaqI | GGGAC | 1 cut(s) | 504 |
| FatI | CATG | 7 cut(s) | 220, 714, 823, 1089, 1199, 1299, 1359 |
| FauI | CCCGC | 1 cut(s) | 488 |
| FblI | GTMKAC | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 9 cut(s) | 487, 538, 541, 672, 679, 765, 999, 1396, 1437 |
| FokI | GGATG | 6 cut(s) | 82, 237, 268, 568, 707, 954 |
| FriOI | GRGCYC | 3 cut(s) | 744, 1317, 1329 |
| Fsp4HI | GCNGC | 9 cut(s) | 487, 538, 541, 672, 679, 765, 999, 1396, 1437 |
| FspBI | CTAG | 3 cut(s) | 447, 978, 995 |
| GlaI | GCGC | 2 cut(s) | 277, 544 |
| GluI | GCNGC | 9 cut(s) | 487, 538, 541, 672, 679, 765, 999, 1396, 1437 |
| GsaI | CCCAGC | 3 cut(s) | 429, 526, 732 |
| HapII | CCGG | 7 cut(s) | 52, 82, 231, 247, 285, 399, 744 |
| HgaI | GACGC | 4 cut(s) | 13, 282, 293, 1046 |
| HhaI | GCGC | 2 cut(s) | 278, 545 |
| Hin1I | GRCGYC | 2 cut(s) | 24, 304 |
| Hin1II | CATG | 7 cut(s) | 224, 718, 827, 1093, 1203, 1303, 1363 |
| Hin6I | GCGC | 2 cut(s) | 276, 543 |
| HinP1I | GCGC | 2 cut(s) | 276, 543 |
| HincII | GTYRAC | 3 cut(s) | 36, 781, 1234 |
| HindII | GTYRAC | 3 cut(s) | 36, 781, 1234 |
| HinfI | GANTC | 3 cut(s) | 70, 356, 856 |
| HpaII | CCGG | 7 cut(s) | 52, 82, 231, 247, 285, 399, 744 |
| HphI | GGTGA | 7 cut(s) | 160, 165, 430, 466, 584, 596, 1059 |
| Hpy166II | GTNNAC | 5 cut(s) | 36, 781, 1234, 1469, 1498 |
| Hpy188I | TCNGA | 4 cut(s) | 750, 799, 1036, 1104 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 364, 511, 640, 1043 |
| Hpy8I | GTNNAC | 5 cut(s) | 36, 781, 1234, 1469, 1498 |
| Hpy99I | CGWCG | 2 cut(s) | 29, 37 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 1231 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 987 |
| HpyCH4V | TGCA | 5 cut(s) | 1163, 1334, 1359, 1410, 1461 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 301, 492, 643, 652, 773, 926, 998, 1436, 1458 |
| HpyF3I | CTNAG | 4 cut(s) | 296, 866, 1101, 1472 |
| HpySE526I | ACGT | 2 cut(s) | 158, 987 |
| Hsp92I | GRCGYC | 2 cut(s) | 24, 304 |
| Hsp92II | CATG | 7 cut(s) | 224, 718, 827, 1093, 1203, 1303, 1363 |
| HspAI | GCGC | 2 cut(s) | 276, 543 |
| Kzo9I | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| LmnI | GCTCC | 3 cut(s) | 1006, 1045, 1309 |
| Lsp1109I | GCAGC | 2 cut(s) | 985, 1423 |
| LweI | GCATC | 1 cut(s) | 259 |
| MaeI | CTAG | 3 cut(s) | 447, 978, 995 |
| MaeII | ACGT | 2 cut(s) | 158, 987 |
| MaeIII | GTNAC | 1 cut(s) | 890 |
| MalI | GATC | 5 cut(s) | 195, 515, 801, 886, 1208 |
| MbiI | CCGCTC | 1 cut(s) | 674 |
| MboI | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| MboII | GAAGA | 8 cut(s) | 343, 859, 1023, 1094, 1151, 1388, 1396, 1480 |
| MfeI | CAATTG | 1 cut(s) | 1367 |
| MflI | RGATCY | 2 cut(s) | 799, 1206 |
| MhlI | GDGCHC | 4 cut(s) | 432, 744, 1317, 1329 |
| MluCI | AATT | 8 cut(s) | 234, 324, 527, 705, 735, 935, 1096, 1367 |
| MlyI | GAGTC | 2 cut(s) | 64, 350 |
| MmeI | TCCRAC | 4 cut(s) | 126, 585, 650, 1039 |
| MseI | TTAA | 3 cut(s) | 963, 1266, 1516 |
| MslI | CAYNNNNRTG | 2 cut(s) | 157, 212 |
| MspA1I | CMGCKG | 3 cut(s) | 108, 212, 495 |
| MspI | CCGG | 7 cut(s) | 52, 82, 231, 247, 285, 399, 744 |
| MspR9I | CCNGG | 5 cut(s) | 53, 114, 227, 399, 744 |
| MunI | CAATTG | 1 cut(s) | 1367 |
| MvaI | CCWGG | 2 cut(s) | 114, 227 |
| MvnI | CGCG | 1 cut(s) | 276 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 301, 492, 643, 652, 773, 926, 998, 1436, 1458 |
| NciI | CCSGG | 3 cut(s) | 53, 399, 744 |
| NcoI | CCATGG | 2 cut(s) | 823, 1299 |
| NdeII | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| NlaIII | CATG | 7 cut(s) | 224, 718, 827, 1093, 1203, 1303, 1363 |
| NlaIV | GGNNCC | 7 cut(s) | 56, 86, 164, 431, 801, 1305, 1496 |
| NmeAIII | GCCGAG | 1 cut(s) | 113 |
| OliI | CACNNNNGTG | 2 cut(s) | 157, 212 |
| PaeR7I | CTCGAG | 2 cut(s) | 72, 638 |
| PceI | AGGCCT | 1 cut(s) | 202 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PfeI | GAWTC | 1 cut(s) | 856 |
| PflFI | GACNNNGTC | 1 cut(s) | 359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 379 |
| PkrI | GCNGC | 9 cut(s) | 488, 539, 542, 673, 680, 766, 1000, 1397, 1438 |
| PleI | GAGTC | 2 cut(s) | 64, 350 |
| PpsI | GAGTC | 2 cut(s) | 64, 350 |
| PpuMI | RGGWCCY | 1 cut(s) | 55 |
| PshAI | GACNNNNGTC | 1 cut(s) | 115 |
| Psp5II | RGGWCCY | 1 cut(s) | 55 |
| Psp6I | CCWGG | 2 cut(s) | 112, 225 |
| PspFI | CCCAGC | 3 cut(s) | 425, 522, 728 |
| PspGI | CCWGG | 2 cut(s) | 112, 225 |
| PspN4I | GGNNCC | 7 cut(s) | 56, 86, 164, 431, 801, 1305, 1496 |
| PspPPI | RGGWCCY | 1 cut(s) | 55 |
| PspXI | VCTCGAGB | 1 cut(s) | 72 |
| PstI | CTGCAG | 1 cut(s) | 1463 |
| PsuI | RGATCY | 2 cut(s) | 799, 1206 |
| PsyI | GACNNNGTC | 1 cut(s) | 359 |
| PvuII | CAGCTG | 1 cut(s) | 212 |
| RsaI | GTAC | 3 cut(s) | 94, 122, 758 |
| RsaNI | GTAC | 3 cut(s) | 93, 121, 757 |
| RseI | CAYNNNNRTG | 2 cut(s) | 157, 212 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| SaqAI | TTAA | 3 cut(s) | 963, 1266, 1516 |
| SatI | GCNGC | 9 cut(s) | 487, 538, 541, 672, 679, 765, 999, 1396, 1437 |
| Sau3AI | GATC | 5 cut(s) | 193, 513, 799, 884, 1206 |
| SchI | GAGTC | 2 cut(s) | 64, 350 |
| ScrFI | CCNGG | 5 cut(s) | 53, 114, 227, 399, 744 |
| SduI | GDGCHC | 4 cut(s) | 432, 744, 1317, 1329 |
| SfaNI | GCATC | 1 cut(s) | 259 |
| SfcI | CTRYAG | 1 cut(s) | 1459 |
| Sfr274I | CTCGAG | 2 cut(s) | 72, 638 |
| SinI | GGWCC | 5 cut(s) | 55, 110, 820, 958, 1495 |
| SlaI | CTCGAG | 2 cut(s) | 72, 638 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 157, 212 |
| SmlI | CTYRAG | 4 cut(s) | 72, 504, 638, 871 |
| SmoI | CTYRAG | 4 cut(s) | 72, 504, 638, 871 |
| Sse9I | AATT | 8 cut(s) | 234, 324, 527, 705, 735, 935, 1096, 1367 |
| SseBI | AGGCCT | 1 cut(s) | 202 |
| SspMI | CTAG | 3 cut(s) | 447, 978, 995 |
| StuI | AGGCCT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 5 cut(s) | 51, 112, 225, 397, 742 |
| StyI | CCWWGG | 2 cut(s) | 823, 1299 |
| TaaI | ACNGT | 2 cut(s) | 89, 1231 |
| TaiI | ACGT | 2 cut(s) | 161, 990 |
| TaqI | TCGA | 8 cut(s) | 27, 35, 73, 196, 354, 639, 887, 1007 |
| TaqII | GACCGA | 2 cut(s) | 77, 349 |
| TasI | AATT | 8 cut(s) | 234, 324, 527, 705, 735, 935, 1096, 1367 |
| TatI | WGTACW | 2 cut(s) | 92, 756 |
| TauI | GCSGC | 7 cut(s) | 489, 540, 543, 674, 681, 767, 1398 |
| TfiI | GAWTC | 1 cut(s) | 856 |
| Tru1I | TTAA | 3 cut(s) | 963, 1266, 1516 |
| Tru9I | TTAA | 3 cut(s) | 963, 1266, 1516 |
| TscAI | CASTG | 1 cut(s) | 1325 |
| TseI | GCWGC | 2 cut(s) | 998, 1436 |
| TspDTI | ATGAA | 6 cut(s) | 703, 709, 869, 1065, 1106, 1272 |
| TspGWI | ACGGA | 3 cut(s) | 169, 1087, 1251 |
| TspRI | CASTG | 1 cut(s) | 1325 |
| Tth111I | GACNNNGTC | 1 cut(s) | 359 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 379 |
| VpaK11BI | GGWCC | 5 cut(s) | 55, 110, 820, 958, 1495 |
| XapI | RAATTY | 1 cut(s) | 234 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 380, 1297 |
| XhoI | CTCGAG | 2 cut(s) | 72, 638 |
| XmiI | GTMKAC | 1 cut(s) | 35 |
| XspI | CTAG | 3 cut(s) | 447, 978, 995 |