Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001134

Physical Location & Seq

Genomic Coordinates Reverse (-)

18939470 .. 18942954

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G199600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCACTCGAGCGGCCAGGTATGTAAACCGAAGGAAGGATCGGGTGGACTTAGACCTCAATAGTGCGCCACCTGGTGACAATCGGGATCAGGAGGGAACTTCAACCCCAGCGGATCCTCAGAATAATCAAGCTACCCTGCTAGGGCAGTCTGCACCACCTAATATGATTGATGTTGAGGCTATTGATGATGATGTTGTTGAATCCTCCCCGAGGGCTTTTGCTGAGGCTAAAAACAATGCCAGGAGGAACCAAAGAAGGATCACTGTTGATGTGGATTTAGAACGAACTAGGGTCACTCGTAACAAGCGCAGAAGAGTTGCACCAAACCAAACAATAATTAATTGTGATTTCTACATAAATTTGGAAAGCAATAACAATTCCAGCTCCACGAAAGAGAGTGTTGCACAACCAGCACCTCCCCCACCAAAGGAGCCCACTTTTAGCTGCCCCATCTGCATGGCCCCATTAGTTGAGGAGATGTCAACGAAATGTGGTCACATTTTCTGTAAGGCGTGCATTAGGGCTGCGATAGGTGCACAGGGTAAATGCCCTACGTGTAGGAGAAAAGTAACTATGAAAGAACTCATTAGGGTATTCCTCCCTACGACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0008150 GO:0008152 GO:0008284 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016310 GO:0016567 GO:0016740 GO:0019219 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031326 GO:0032446 GO:0032991 GO:0033554 GO:0034097 GO:0035556 GO:0036211 GO:0042127 GO:0042221 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048660 GO:0048661 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0051403 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070498 GO:0070534 GO:0070555 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

206

Amino Acids

22.82

Weight (kDa)

9.25

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07200 AT3G07200 AT3G07200 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655 AT5G48655
fragaria_vesca	FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_2g18620 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13470 FvH4_4g13481
malus_domestica	MD04G1013800.v1.1 MD04G1014000.v1.1 MD05G1172100.v1.1
prunus_persica	Prupe.1G160800_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.1G161000_v2.0.a1 Prupe.8G199600_v2.0.a1 Prupe.8G199600_v2.0.a1
pyrus_communis	pycom05g15880
rosa_chinensis	RchiOBHm_Chr4g0414081 RchiOBHm_Chr4g0414101 RchiOBHm_Chr6g0284181
rosa_laevigata	RLG00000008177 RLG00000008179 RLG00000012760
rosa_multiflora	Rmu_sc0003264.1_g000011 Rmu_sc0006428.1_g000005
rosa_roxburghii	Rroxscaffold_5G00358010 Rroxscaffold_5G00358030 Rroxscaffold_7G00184810
rosa_rugosa	Rorug04G0125200 Rorug04G0125400 Rorug04G0125500 Rorug06G0161700 Rorug06G0161700
rosa_samantha	Rh4AG183900 Rh4AG184100 Rh4BG183400 Rh4BG183600 Rh4CG195800 Rh4CG196000 Rh4DG179300 Rh4DG179500 Rh6AG274500 Rh6BG274900 Rh6CG276700 Rh6DG269300
rosa_wichuraiana	Rw4G015650 Rw4G015670 Rw6G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 113
AclWI	GGATC	5 cut(s)	48, 96, 110, 123, 269
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	77
AfiI	CCNNNNNNNGG	4 cut(s)	37, 144, 213, 430
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	105, 203
AjnI	CCWGG	3 cut(s)	17, 73, 242
AluBI	AGCT	3 cut(s)	134, 387, 447
AluI	AGCT	3 cut(s)	134, 387, 447
Alw21I	GWGCWC	2 cut(s)	8, 541
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	5 cut(s)	48, 96, 110, 123, 269
Ama87I	CYCGRG	2 cut(s)	9, 211
AoxI	GGCC	2 cut(s)	15, 462
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	2 cut(s)	447, 527
ApoI	RAATTY	1 cut(s)	361
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	70, 312
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	2 cut(s)	9, 211
BaeGI	GKGCMC	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	8, 541
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	434, 514
BccI	CCATC	1 cut(s)	461
BciT130I	CCWGG	3 cut(s)	19, 75, 244
BfaI	CTAG	2 cut(s)	143, 291
BisI	GCNGC	3 cut(s)	15, 448, 528
BlsI	GCNGC	3 cut(s)	16, 449, 529
Bme1390I	CCNGG	3 cut(s)	19, 75, 244
BmeT110I	CYCGRG	2 cut(s)	9, 211
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	4 cut(s)	117, 251, 435, 465
BmrFI	CCNGG	3 cut(s)	19, 75, 244
Bpu10I	CCTNAGC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 144, 213, 430
BseBI	CCWGG	3 cut(s)	19, 75, 244
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	4 cut(s)	37, 144, 213, 430
BseMII	CTCAG	2 cut(s)	134, 216
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	2 cut(s)	434, 514
BseYI	CCCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	17, 464
BsiHKAI	GWGCWC	2 cut(s)	8, 541
BsiHKCI	CYCGRG	2 cut(s)	9, 211
BslI	CCNNNNNNNGG	4 cut(s)	37, 144, 213, 430
BsnI	GGCC	2 cut(s)	17, 464
BsoBI	CYCGRG	2 cut(s)	9, 211
Bsp1286I	GDGCHC	3 cut(s)	8, 438, 541
Bsp143I	GATC	4 cut(s)	40, 88, 115, 261
BspACI	CCGC	2 cut(s)	14, 113
BspANI	GGCC	2 cut(s)	17, 464
BspCNI	CTCAG	2 cut(s)	133, 217
BspLI	GGNNCC	4 cut(s)	117, 251, 435, 465
BspPI	GGATC	5 cut(s)	48, 96, 110, 123, 269
BsrBI	CCGCTC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	40, 88, 115, 261
Bst2UI	CCWGG	3 cut(s)	19, 75, 244
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	3 cut(s)	52, 120, 225
BstENI	CCTNNNNNAGG	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	70, 312
BstKTI	GATC	4 cut(s)	43, 91, 118, 264
BstMBI	GATC	4 cut(s)	40, 88, 115, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 456, 536
BstNI	CCWGG	3 cut(s)	19, 75, 244
BstSCI	CCNGG	3 cut(s)	17, 73, 242
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	434, 514
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	17, 464
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	517
CfoI	GCGC	2 cut(s)	70, 312
Cfr13I	GGNCC	1 cut(s)	463
CsiI	ACCWGGT	1 cut(s)	73
CviAII	CATG	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	52, 120, 225
DpnI	GATC	4 cut(s)	42, 90, 117, 263
DpnII	GATC	4 cut(s)	40, 88, 115, 261
DraIII	CACNNNGTG	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	438
Eco88I	CYCGRG	2 cut(s)	9, 211
EcoNI	CCTNNNNNAGG	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	17, 73, 242
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	1 cut(s)	463
FaiI	YATR	5 cut(s)	24, 167, 359, 461, 578
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	15, 448, 528
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	15, 448, 528
FspBI	CTAG	2 cut(s)	143, 291
GlaI	GCGC	2 cut(s)	69, 311
GluI	GCNGC	3 cut(s)	15, 448, 528
GsaI	CCCAGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	17, 464
HhaI	GCGC	2 cut(s)	70, 312
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	2 cut(s)	68, 310
HinP1I	GCGC	2 cut(s)	68, 310
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	4 cut(s)	28, 49, 486, 539
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	86, 92
Hpy8I	GTNNAC	4 cut(s)	28, 49, 486, 539
HpyAV	CCTTC	3 cut(s)	27, 31, 252
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	155, 323, 407, 459, 519, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 456, 536
HpyF3I	CTNAG	3 cut(s)	52, 120, 225
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	2 cut(s)	68, 310
Kzo9I	GATC	4 cut(s)	40, 88, 115, 261
LmnI	GCTCC	2 cut(s)	392, 433
Lsp1109I	GCAGC	2 cut(s)	434, 514
MabI	ACCWGGT	1 cut(s)	73
MaeI	CTAG	2 cut(s)	143, 291
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	5 cut(s)	77, 295, 302, 497, 571
MalI	GATC	4 cut(s)	42, 90, 117, 263
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	40, 88, 115, 261
MboII	GAAGA	1 cut(s)	327
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	3 cut(s)	8, 438, 541
MluCI	AATT	4 cut(s)	339, 343, 361, 379
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	19, 75, 244
MvaI	CCWGG	3 cut(s)	19, 75, 244
MwoI	GCNNNNNNNGC	3 cut(s)	413, 456, 536
NdeII	GATC	4 cut(s)	40, 88, 115, 261
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	4 cut(s)	117, 251, 435, 465
NmuCI	GTSAC	3 cut(s)	77, 295, 497
PaeR7I	CTCGAG	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	16, 449, 529
Ppu21I	YACGTR	1 cut(s)	558
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	3 cut(s)	17, 73, 242
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	3 cut(s)	17, 73, 242
PspN4I	GGNNCC	4 cut(s)	117, 251, 435, 465
PspPI	GGNCC	1 cut(s)	463
PspXI	VCTCGAGB	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	15, 448, 528
Sau3AI	GATC	4 cut(s)	40, 88, 115, 261
Sau96I	GGNCC	1 cut(s)	463
ScrFI	CCNGG	3 cut(s)	19, 75, 244
SduI	GDGCHC	3 cut(s)	8, 438, 541
SexAI	ACCWGGT	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	4 cut(s)	339, 343, 361, 379
SsiI	CCGC	2 cut(s)	14, 113
SspMI	CTAG	2 cut(s)	143, 291
StyD4I	CCNGG	3 cut(s)	17, 73, 242
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	339, 343, 361, 379
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	3 cut(s)	77, 295, 497
TseI	GCWGC	2 cut(s)	447, 527
Tsp45I	GTSAC	3 cut(s)	77, 295, 497
TspDTI	ATGAA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	537
VspI	ATTAAT	1 cut(s)	342
XagI	CCTNNNNNAGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	2 cut(s)	143, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.