AT3G09035

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001977
Physical Location & Seq
Forward (+)
2758812 .. 2760382
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09035.1

Sequence Viewer

Length: 1017 bp
ATGGCCATGTTCAAAACCTTATCTTTTTTGTTCCTTTTGTGCTTTCAGATACATGGAACGGTGGCTGCAGATGAAAATTCCTTGTTTTCATTCAATGGTTTTGTAAAATCTCCGAGCTTTGACAAGAGGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTGACTCAGTGACTCGAAGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAATCTTTTCAAAGGTAAACAGAGGAATTCGAGATCTTTCTCTACTCACTTCTCGTTTTCTTCCATGTCCAACGAGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGGATCTTAGTCTGTTTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATCACAATATGCAAAGAACGAGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGTGCAAGAATTTTAGTTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGTGACTTGATGATGGACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGGTTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTCTCTTTCTCGGTAGACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAATAAGACATCCTCCTCCGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAGTTTCAAAGGAGGAGGAAAATGGTCGAGGGAGAAGTGAGTGTACGCGGAAAATGCTTGGTGCTTTGATCTTTGGTGCAGCTTGTGGAGCCTTAGGGGCACTGCTGGGTTTGTATCTCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGCTATTGAACAAGGCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

338

Amino Acids

37.41

Weight (kDa)

9.37

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 262 8.4e-46 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 681
AccI GTMKAC 2 cut(s) 493, 666
AccII CGCG 1 cut(s) 871
AciI CCGC 3 cut(s) 809, 871, 964
AclWI GGATC 2 cut(s) 363, 638
AcoI YGGCCR 3 cut(s) 3, 672, 972
AcsI RAATTY 3 cut(s) 76, 259, 480
AfaI GTAC 1 cut(s) 868
AfiI CCNNNNNNNGG 1 cut(s) 681
AgsI TTSAA 7 cut(s) 13, 94, 244, 770, 815, 831, 1001
AjnI CCWGG 1 cut(s) 458
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 7 cut(s) 117, 154, 181, 567, 637, 714, 905
AluI AGCT 7 cut(s) 117, 154, 181, 567, 637, 714, 905
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 363, 638
AoxI GGCC 3 cut(s) 3, 672, 972
ApeKI GCWGC 2 cut(s) 65, 902
ApoI RAATTY 3 cut(s) 76, 259, 480
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
Asp700I GAANNNNTTC 1 cut(s) 520
AsuHPI GGTGA 3 cut(s) 326, 545, 704
AsuII TTCGAA 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 925
BalI TGGCCA 2 cut(s) 5, 674
BarI GAAGNNNNNNTAC 2 cut(s) 850, 882
BbvI GCAGC 2 cut(s) 52, 914
BccI CCATC 4 cut(s) 239, 352, 538, 598
BceAI ACGGC 2 cut(s) 939, 959
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 920
BglII AGATCT 1 cut(s) 266
BisI GCNGC 3 cut(s) 66, 809, 903
BlsI GCNGC 3 cut(s) 67, 810, 904
Bme1390I CCNGG 1 cut(s) 460
BmiI GGNNCC 3 cut(s) 342, 913, 981
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 1 cut(s) 786
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 1 cut(s) 442
Bpu14I TTCGAA 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 738, 975
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 681
Bse21I CCTNAGG 1 cut(s) 916
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 738, 975
BseGI GGATG 2 cut(s) 778, 801
BseLI CCNNNNNNNGG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 204, 554
BseRI GAGGAG 2 cut(s) 774, 851
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 2 cut(s) 52, 914
BseYI CCCAGC 1 cut(s) 928
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 871
BshFI GGCC 3 cut(s) 5, 674, 974
BslI CCNNNNNNNGG 1 cut(s) 681
BsmAI GTCTC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 3 cut(s) 5, 674, 974
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 4 cut(s) 266, 355, 643, 891
BspACI CCGC 3 cut(s) 809, 871, 964
BspANI GGCC 3 cut(s) 5, 674, 974
BspCNI CTCAG 2 cut(s) 203, 555
BspFNI CGCG 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 342, 913, 981
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 2 cut(s) 363, 638
BspT104I TTCGAA 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 738, 975
BssMI GATC 4 cut(s) 266, 355, 643, 891
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 6 cut(s) 61, 167, 386, 433, 473, 703
Bst6I CTCTTC 1 cut(s) 736
BstAPI GCANNNNNTGC 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 5 cut(s) 190, 359, 563, 594, 916
BstDSI CCRYGG 1 cut(s) 975
BstF5I GGATG 2 cut(s) 778, 801
BstFNI CGCG 1 cut(s) 871
BstKTI GATC 4 cut(s) 269, 358, 646, 894
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 266, 355, 643, 891
BstMWI GCNNNNNNNGC 4 cut(s) 805, 877, 911, 920
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 1 cut(s) 871
BstV1I GCAGC 2 cut(s) 52, 914
BstX2I RGATCY 2 cut(s) 266, 355
BstYI RGATCY 2 cut(s) 266, 355
Bsu36I CCTNAGG 1 cut(s) 916
BsuRI GGCC 3 cut(s) 5, 674, 974
BtgI CCRYGG 1 cut(s) 975
BtsCI GGATG 2 cut(s) 778, 801
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 5 cut(s) 198, 478, 699, 810, 923
Csp6I GTAC 1 cut(s) 867
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 4 cut(s) 7, 53, 298, 759
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 5 cut(s) 190, 359, 563, 594, 916
DpnI GATC 4 cut(s) 268, 357, 645, 893
DpnII GATC 4 cut(s) 266, 355, 643, 891
EaeI YGGCCR 3 cut(s) 3, 672, 972
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 916
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 738
FaeI CATG 4 cut(s) 10, 56, 301, 762
FaiI YATR 9 cut(s) 8, 54, 299, 417, 572, 582, 682, 760, 952
FatI CATG 4 cut(s) 6, 52, 297, 758
FblI GTMKAC 2 cut(s) 493, 666
Fnu4HI GCNGC 3 cut(s) 66, 809, 903
FokI GGATG 2 cut(s) 765, 808
Fsp4HI GCNGC 3 cut(s) 66, 809, 903
FspBI CTAG 1 cut(s) 348
GluI GCNGC 3 cut(s) 66, 809, 903
GsaI CCCAGC 1 cut(s) 932
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 3 cut(s) 5, 674, 974
Hin1II CATG 4 cut(s) 10, 56, 301, 762
HinfI GANTC 8 cut(s) 146, 175, 188, 196, 213, 500, 559, 612
HphI GGTGA 3 cut(s) 326, 545, 704
Hpy166II GTNNAC 5 cut(s) 220, 251, 494, 667, 867
Hpy188I TCNGA 5 cut(s) 48, 114, 564, 617, 789
Hpy188III TCNNGA 3 cut(s) 264, 943, 983
Hpy8I GTNNAC 5 cut(s) 220, 251, 494, 667, 867
HpyAV CCTTC 2 cut(s) 370, 549
HpyCH4III ACNGT 6 cut(s) 61, 167, 386, 433, 473, 703
HpyCH4V TGCA 5 cut(s) 68, 419, 476, 799, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 805, 877, 911, 920
HpyF3I CTNAG 5 cut(s) 190, 359, 563, 594, 916
Hsp92II CATG 4 cut(s) 10, 56, 301, 762
Kzo9I GATC 4 cut(s) 266, 355, 643, 891
LmnI GCTCC 1 cut(s) 911
LpnPI CCDG 9 cut(s) 140, 445, 450, 472, 510, 609, 914, 928, 996
Lsp1109I GCAGC 2 cut(s) 52, 914
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 3 cut(s) 193, 533, 697
MalI GATC 4 cut(s) 268, 357, 645, 893
MboI GATC 4 cut(s) 266, 355, 643, 891
MboII GAAGA 4 cut(s) 285, 643, 723, 726
MflI RGATCY 2 cut(s) 266, 355
MhlI GDGCHC 1 cut(s) 925
MlsI TGGCCA 2 cut(s) 5, 674
MluCI AATT 4 cut(s) 76, 259, 480, 510
MluNI TGGCCA 2 cut(s) 5, 674
MlyI GAGTC 4 cut(s) 182, 190, 222, 553
MmeI TCCRAC 1 cut(s) 327
Mox20I TGGCCA 2 cut(s) 5, 674
Mph1103I ATGCAT 1 cut(s) 801
MroXI GAANNNNTTC 1 cut(s) 520
MscI TGGCCA 2 cut(s) 5, 674
MseI TTAA 1 cut(s) 710
Msp20I TGGCCA 2 cut(s) 5, 674
MspA1I CMGCKG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 460
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 871
MwoI GCNNNNNNNGC 4 cut(s) 805, 877, 911, 920
NdeII GATC 4 cut(s) 266, 355, 643, 891
NlaIII CATG 4 cut(s) 10, 56, 301, 762
NlaIV GGNNCC 3 cut(s) 342, 913, 981
NmuCI GTSAC 3 cut(s) 193, 533, 697
NsiI ATGCAT 1 cut(s) 801
NspV TTCGAA 1 cut(s) 149
PctI GAATGC 1 cut(s) 799
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 4 cut(s) 146, 175, 500, 612
PflMI CCANNNNNTGG 1 cut(s) 681
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 3 cut(s) 67, 810, 904
PleI GAGTC 4 cut(s) 182, 190, 221, 553
PpsI GAGTC 4 cut(s) 182, 190, 221, 553
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 928
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 342, 913, 981
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 266, 355
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 3 cut(s) 66, 809, 903
Sau3AI GATC 4 cut(s) 266, 355, 643, 891
SchI GAGTC 4 cut(s) 182, 190, 222, 553
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 149
Sse9I AATT 4 cut(s) 76, 259, 480, 510
SsiI CCGC 3 cut(s) 809, 871, 964
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 6 cut(s) 61, 167, 386, 433, 473, 703
TaqI TCGA 7 cut(s) 149, 199, 211, 263, 444, 610, 850
TasI AATT 4 cut(s) 76, 259, 480, 510
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 4 cut(s) 146, 175, 500, 612
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 5 cut(s) 198, 478, 706, 810, 930
TseFI GTSAC 3 cut(s) 193, 533, 697
TseI GCWGC 2 cut(s) 65, 902
Tsp45I GTSAC 3 cut(s) 193, 533, 697
TspDTI ATGAA 4 cut(s) 78, 87, 747, 837
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 5 cut(s) 198, 478, 706, 810, 930
Van91I CCANNNNNTGG 1 cut(s) 681
XapI RAATTY 3 cut(s) 76, 259, 480
XmiI GTMKAC 2 cut(s) 493, 666
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.