RLG00000024720

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001977
Physical Location & Seq
Forward (+)
38531979 .. 38533719
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024720

Sequence Viewer

Length: 1050 bp
ATGGTCTCATTATTCATTTCCACTCACTTAGCCACTTTTTCCCTGCTCATTTTCATCCTCAGAGCCTCAGCTGCAGACTCAGATTCCTCATTTTCTTTCACCAAGTTTGGTAAAGATCCAAACTTTGAGTCCAATATTGCTCTTTATGGAGATGCCAAGATTGTTAGTGGTGCAGTTCAGCTCCCTAGTTCAGTGAGCTCAAGTTCTGGGAGAGTCATGTACAAGAAACCCCTCAAGCTTGGTGAAGGTAAGCCTCAGAAATCAGTGTCTTTTTCCAGTCACTTCACTTTGTCTATGTCCAAAGAAAATGGGGATGGTTTGGCCTTTGTTATGGTTCCAAGTGGTTTGAATCTTAGCCTCTTTGGTAATAGCTCCTTTGGGCTTGATATGGGATATGGGAAAAGTAAATTGAAGGTTGTTGCAGTTAAATTGCAGTATGATTACTTGGTTGGTAAGGTCCATGTGGGGATTGATGTGGGTAGTTCTGTATCAGCTAGAGTTAACAATGCTTCAGCTATCAAATTGAATCTAACTAGTGGTGATAGAACAAATGCTTGGATTGATTATGAAGCCGGTTCGAAAAGAGTTGAAGTGAGATTGAGTCAATTGGGTCGTTTAAGGCCAGCTGATCCTTTGCTGTGGTACCCAATTGACTTGTCAAAATTGTGGGGAGATGAGAAAGTGTTTGTGGGCTTAAGCGCGCAGAATAGGAACTCTTCTCAAACTTGTTCCATATATTCATGGAGCTTCGAGCAAAGGCATGTTCCGGACTGGATGCATTCAGAGCCACTAGATCCTAAGACCTTATCTAAGAGCTCGAAACCGGTGACAGTTGAGAAGAGAAAGGATTGTGTATTGAGGGCTGTTGCTGCAATGGTTCTCGGAGTTGCTTGTGGAGCATTGGCATCATACATTGTGTTGTATTTGAGGAGAATCTTTGGTAATAGGCGTCCGGTGGTGCCAGAAGAGTATGCGATGCAGCCTCAACAATTCGAGTACAAGAAAATGAAAGTAGTGGTAGATAAATCCATCGAAGATGGAAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

350

Amino Acids

38.38

Weight (kDa)

9.5

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 263 9.2e-51 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 2 cut(s) 642, 958
AccII CGCG 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 766
AclWI GGATC 3 cut(s) 110, 623, 788
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 3 cut(s) 221, 644, 998
AflII CTTAAG 1 cut(s) 694
AgeI ACCGGT 1 cut(s) 823
AgsI TTSAA 4 cut(s) 349, 412, 526, 590
AhlI ACTAGT 1 cut(s) 533
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
Alw21I GWGCWC 2 cut(s) 200, 818
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 3 cut(s) 110, 623, 788
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 2 cut(s) 321, 620
ApeKI GCWGC 3 cut(s) 71, 869, 979
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsiGI ACCGGT 1 cut(s) 823
Asp718I GGTACC 1 cut(s) 642
AspLEI GCGC 2 cut(s) 701, 703
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 4 cut(s) 91, 254, 551, 838
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 457
BanI GGYRCC 2 cut(s) 642, 958
BanII GRGCYC 2 cut(s) 200, 818
Bbv12I GWGCWC 2 cut(s) 200, 818
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 58, 856, 991
BccI CCATC 3 cut(s) 308, 1031, 1037
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 4 cut(s) 186, 495, 534, 791
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 694
BisI GCNGC 3 cut(s) 72, 870, 980
BlsI GCNGC 3 cut(s) 73, 871, 981
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 3 cut(s) 336, 644, 960
BmsI GCATC 4 cut(s) 142, 765, 914, 966
Bpu10I CCTNAGC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 184, 218
BsaHI GRCGYC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 3 cut(s) 766, 823, 952
Bse118I RCCGGY 2 cut(s) 572, 823
Bse1I ACTGG 2 cut(s) 276, 776
Bse3DI GCAATG 1 cut(s) 879
BseAI TCCGGA 1 cut(s) 766
BseGI GGATG 3 cut(s) 54, 319, 780
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 4 cut(s) 73, 81, 93, 269
BseNI ACTGG 2 cut(s) 276, 776
BsePI GCGCGC 1 cut(s) 699
BseRI GAGGAG 1 cut(s) 943
BseXI GCAGC 3 cut(s) 58, 856, 991
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 2 cut(s) 323, 622
BshNI GGYRCC 2 cut(s) 642, 958
BshTI ACCGGT 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 200, 818
BsiSI CCGG 4 cut(s) 573, 767, 824, 953
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 323, 622
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 200, 818
Bsp13I TCCGGA 1 cut(s) 766
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 115, 628, 793
BspANI GGCC 2 cut(s) 323, 622
BspCNI CTCAG 4 cut(s) 72, 80, 92, 268
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 3 cut(s) 336, 644, 960
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 110, 623, 788
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 642, 958
BspTI CTTAAG 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 2 cut(s) 572, 823
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 2 cut(s) 276, 776
BssAI RCCGGY 2 cut(s) 572, 823
BssHII GCGCGC 1 cut(s) 699
BssMI GATC 3 cut(s) 115, 628, 793
BssNI GRCGYC 1 cut(s) 949
Bst4CI ACNGT 1 cut(s) 832
Bst6I CTCTTC 3 cut(s) 721, 833, 960
BstACI GRCGYC 1 cut(s) 949
BstAFI CTTAAG 1 cut(s) 694
BstAUI TGTACA 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 624, 701
BstDEI CTNAG 8 cut(s) 28, 59, 67, 79, 255, 353, 798, 810
BstF5I GGATG 3 cut(s) 54, 319, 780
BstFNI CGCG 1 cut(s) 701
BstHHI GCGC 2 cut(s) 701, 703
BstKTI GATC 3 cut(s) 118, 631, 796
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 3 cut(s) 115, 628, 793
BstMWI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
BstNSI RCATGY 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 3 cut(s) 58, 856, 991
BstX2I RGATCY 2 cut(s) 115, 793
BstYI RGATCY 2 cut(s) 115, 793
BsuRI GGCC 2 cut(s) 323, 622
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 3 cut(s) 54, 319, 780
BtsIMutI CAGTG 2 cut(s) 198, 270
Cac8I GCNNGC 2 cut(s) 624, 701
CfoI GCGC 2 cut(s) 701, 703
Cfr10I RCCGGY 2 cut(s) 572, 823
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 220, 643, 997
CspAI ACCGGT 1 cut(s) 823
CviAII CATG 4 cut(s) 217, 461, 741, 761
CviQI GTAC 3 cut(s) 220, 643, 997
DdeI CTNAG 8 cut(s) 28, 59, 67, 79, 255, 353, 798, 810
DpnI GATC 3 cut(s) 117, 630, 795
DpnII GATC 3 cut(s) 115, 628, 793
Eam1104I CTCTTC 3 cut(s) 721, 833, 960
EarI CTCTTC 3 cut(s) 721, 833, 960
Ecl136II GAGCTC 2 cut(s) 198, 816
Eco24I GRGCYC 2 cut(s) 200, 818
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 198, 816
Eco57I CTGAAG 1 cut(s) 495
EcoICRI GAGCTC 2 cut(s) 198, 816
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 200, 818
FaeI CATG 4 cut(s) 220, 464, 744, 764
FatI CATG 4 cut(s) 216, 460, 740, 760
Fnu4HI GCNGC 3 cut(s) 72, 870, 980
FokI GGATG 3 cut(s) 41, 326, 787
FriOI GRGCYC 2 cut(s) 200, 818
Fsp4HI GCNGC 3 cut(s) 72, 870, 980
FspBI CTAG 4 cut(s) 186, 495, 534, 791
GlaI GCGC 2 cut(s) 700, 702
GluI GCNGC 3 cut(s) 72, 870, 980
HaeIII GGCC 2 cut(s) 323, 622
HapII CCGG 4 cut(s) 573, 767, 824, 953
HgaI GACGC 1 cut(s) 938
HhaI GCGC 2 cut(s) 701, 703
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 4 cut(s) 220, 464, 744, 764
Hin6I GCGC 2 cut(s) 699, 701
HinP1I GCGC 2 cut(s) 699, 701
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 8 cut(s) 77, 83, 128, 213, 349, 526, 601, 933
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 573, 767, 824, 953
HphI GGTGA 4 cut(s) 91, 254, 551, 838
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 5 cut(s) 62, 82, 258, 784, 884
Hpy188III TCNNGA 1 cut(s) 767
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 2 cut(s) 239, 406
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4V TGCA 7 cut(s) 74, 173, 422, 433, 778, 872, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
HpyF3I CTNAG 8 cut(s) 28, 59, 67, 79, 255, 353, 798, 810
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 4 cut(s) 220, 464, 744, 764
HspAI GCGC 2 cut(s) 699, 701
Kpn2I TCCGGA 1 cut(s) 766
KpnI GGTACC 1 cut(s) 646
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 3 cut(s) 115, 628, 793
LmnI GCTCC 4 cut(s) 186, 377, 744, 896
Lsp1109I GCAGC 3 cut(s) 58, 856, 991
LweI GCATC 4 cut(s) 142, 765, 914, 966
MaeI CTAG 4 cut(s) 186, 495, 534, 791
MaeIII GTNAC 2 cut(s) 278, 826
MalI GATC 3 cut(s) 117, 630, 795
MboI GATC 3 cut(s) 115, 628, 793
MboII GAAGA 4 cut(s) 708, 850, 977, 1046
MfeI CAATTG 2 cut(s) 605, 648
MflI RGATCY 2 cut(s) 115, 793
MhlI GDGCHC 2 cut(s) 200, 818
MluCI AATT 7 cut(s) 407, 428, 521, 605, 648, 662, 989
MlyI GAGTC 4 cut(s) 71, 137, 222, 610
MnlI CCTC 9 cut(s) 68, 76, 97, 242, 264, 368, 852, 921, 993
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 766
MseI TTAA 4 cut(s) 426, 501, 617, 695
MspA1I CMGCKG 2 cut(s) 71, 626
MspCI CTTAAG 1 cut(s) 694
MspI CCGG 4 cut(s) 573, 767, 824, 953
MunI CAATTG 2 cut(s) 605, 648
Mva1269I GAATGC 1 cut(s) 778
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
NdeII GATC 3 cut(s) 115, 628, 793
NlaIII CATG 4 cut(s) 220, 464, 744, 764
NlaIV GGNNCC 3 cut(s) 336, 644, 960
NmuCI GTSAC 2 cut(s) 278, 826
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 764
NspV TTCGAA 1 cut(s) 578
PauI GCGCGC 1 cut(s) 699
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 4 cut(s) 83, 349, 526, 933
PinAI ACCGGT 1 cut(s) 823
PkrI GCNGC 3 cut(s) 73, 871, 981
PleI GAGTC 4 cut(s) 71, 136, 221, 609
PpsI GAGTC 4 cut(s) 71, 136, 221, 609
Psp124BI GAGCTC 2 cut(s) 200, 818
PspN4I GGNNCC 3 cut(s) 336, 644, 960
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 115, 793
PteI GCGCGC 1 cut(s) 699
PvuII CAGCTG 2 cut(s) 71, 626
RsaI GTAC 3 cut(s) 221, 644, 998
RsaNI GTAC 3 cut(s) 220, 643, 997
SacI GAGCTC 2 cut(s) 200, 818
SaqAI TTAA 4 cut(s) 426, 501, 617, 695
SatI GCNGC 3 cut(s) 72, 870, 980
Sau3AI GATC 3 cut(s) 115, 628, 793
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 4 cut(s) 71, 137, 222, 610
SduI GDGCHC 2 cut(s) 200, 818
SfaNI GCATC 4 cut(s) 142, 765, 914, 966
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 3 cut(s) 199, 233, 694
SmoI CTYRAG 3 cut(s) 199, 233, 694
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 7 cut(s) 407, 428, 521, 605, 648, 662, 989
SspI AATATT 1 cut(s) 136
SspMI CTAG 4 cut(s) 186, 495, 534, 791
SstI GAGCTC 2 cut(s) 200, 818
TaaI ACNGT 1 cut(s) 832
TaqI TCGA 5 cut(s) 578, 750, 818, 993, 1032
TasI AATT 7 cut(s) 407, 428, 521, 605, 648, 662, 989
TatI WGTACW 2 cut(s) 219, 996
TfiI GAWTC 4 cut(s) 83, 349, 526, 933
Tru1I TTAA 4 cut(s) 426, 501, 617, 695
Tru9I TTAA 4 cut(s) 426, 501, 617, 695
TscAI CASTG 2 cut(s) 198, 270
TseFI GTSAC 2 cut(s) 278, 826
TseI GCWGC 3 cut(s) 71, 869, 979
Tsp45I GTSAC 2 cut(s) 278, 826
TspDTI ATGAA 5 cut(s) 4, 43, 582, 729, 1022
TspRI CASTG 2 cut(s) 198, 270
Vha464I CTTAAG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 457
XceI RCATGY 1 cut(s) 764
XspI CTAG 4 cut(s) 186, 495, 534, 791
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.