Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

21857970 .. 21859061

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGAACTTCACCATTTCCCTCTGCAATTTCCCCTTCATTCTCCTCCTCTCCTCCTCCTACTTCCTAACCCTAACCCTAGCTGCGGAACCCATTTCTTCTTCCGAGCCCAAACCCCTAAACAACAGCAGCAGCAACCCCAACCCCAACTTCGATTCCGAAATTTTCCTCCTTGGCGACGCCGCGCTAGCAGGCGGTGGATCTTATGTCAACATTACGCGGCCGTCGGTCTCAAGCTCCGGTCTTCTCCTCCGCAGAAAACCCTTTAAATTTATCAACGGGAATCTCAGCAACCCGGCGTCGTTTTCCACCGAGTTCGCATTCTCGATGACGCCTGGCGGCGGTGACGGCCTCTTGCTCGTCTTTGCTCCCGGAGATTTGGGGTCCAGATTGTCTGCTAAGGGCCCCTTTGGGATTAACGGTGAGGATCGATTTCTGGGTATTGAATTTGATACTGAAATGAATGGAGATATGAATGATTTGAATGCTAATCACATAGGGGTAGATGTTGGTAGCTTTGTATCTCTAGCTGTTGGTAATGTTTCTGAATTGAATTTGGTGCTAAATAGTGGAGAAAAGTTGAAGTGTTGGATTGATTATGATGCTAGTTCGAAACGATTGGAGATTAGGCTAGGCAAGGTGGATGACTCGAGGCCTGATAATCCGATTACAGCGTATGGGATAGATTTGTCGGGAATGTGGAGAGATGAGGATGTGTATGTAGGTATTAGCTCGTCAAATTCGAATGGCAATTCGTCGCAGATTAGCAGTGTGTATTCATGGAATTTTAGGCTTAGAAATGTTCCCAGGTCAATGCATTCTCTGCCAGTGAATCCGAGGGGGTATTTGGATGGTCACGGTAAGAGTTTGAGCATGGATAAGCGAGGGGTTTGCCCTTTGACAGTTCTTGCTGGGATGATCTTCGTGACTGGGTGTGGAGCACTGGTGGCATTTGTGGTGCTGTTTTTGTGGGCTATTATCATCAGTAGGCACACGGAGTTCCCTGCTGAGTTTCCTGCAAAGCCTGTGGATTTTAGGTATGAGAAGATCGATGTAGTTGTAGAGAAAGATGTCAATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

364

Amino Acids

39.26

Weight (kDa)

5.34

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	50 - 273	1.2e-42	Legume lectin domain
Lectin_L-type_dom	PF18483	99 - 248	2.1e-07	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	185, 220
AciI	CCGC	7 cut(s)	86, 183, 195, 220, 253, 339, 342
AclWI	GGATC	2 cut(s)	208, 435
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
AcyI	GRCGYC	3 cut(s)	180, 299, 332
AfiI	CCNNNNNNNGG	2 cut(s)	85, 341
AgsI	TTSAA	4 cut(s)	446, 484, 553, 583
AjnI	CCWGG	2 cut(s)	334, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	5 cut(s)	83, 237, 516, 530, 732
AluI	AGCT	5 cut(s)	83, 237, 516, 530, 732
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	208, 435
Ama87I	CYCGRG	1 cut(s)	649
AoxI	GGCC	4 cut(s)	221, 349, 403, 653
ApaI	GGGCCC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	83, 129, 132
ApoI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	384, 403, 404
AsuC2I	CCSGG	2 cut(s)	296, 372
AsuHPI	GGTGA	3 cut(s)	4, 356, 434
AsuII	TTCGAA	2 cut(s)	611, 743
AsuNHI	GCTAGC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	111, 407
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	3 cut(s)	70, 141, 144
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	2 cut(s)	208, 364
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BciT130I	CCWGG	2 cut(s)	336, 808
BcnI	CCSGG	2 cut(s)	296, 372
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	5 cut(s)	80, 188, 527, 606, 632
BisI	GCNGC	6 cut(s)	84, 130, 133, 183, 221, 340
BlsI	GCNGC	6 cut(s)	85, 131, 134, 184, 222, 341
Bme1390I	CCNGG	4 cut(s)	296, 336, 372, 808
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	3 cut(s)	384, 403, 404
BmiI	GGNNCC	4 cut(s)	90, 385, 405, 406
BmrFI	CCNGG	4 cut(s)	296, 336, 372, 808
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	1 cut(s)	592
BmtI	GCTAGC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	2 cut(s)	611, 743
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	296, 372
Bsa29I	ATCGAT	2 cut(s)	430, 1050
BsaHI	GRCGYC	3 cut(s)	180, 299, 332
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	172, 806, 836
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 341
Bse1I	ACTGG	3 cut(s)	827, 934, 948
BseBI	CCWGG	2 cut(s)	336, 808
BseCI	ATCGAT	2 cut(s)	430, 1050
BseDI	CCNNGG	3 cut(s)	172, 806, 836
BseGI	GGATG	4 cut(s)	649, 718, 856, 921
BseLI	CCNNNNNNNGG	2 cut(s)	85, 341
BseMII	CTCAG	2 cut(s)	301, 999
BseNI	ACTGG	3 cut(s)	827, 934, 948
BseRI	GAGGAG	5 cut(s)	35, 38, 43, 46, 239
BseSI	GKGCMC	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	70, 141, 144
BseYI	CCCAGC	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	185, 220
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	4 cut(s)	223, 351, 405, 655
BshVI	ATCGAT	2 cut(s)	430, 1050
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	3 cut(s)	240, 296, 372
BslI	CCNNNNNNNGG	2 cut(s)	85, 341
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	3 cut(s)	320, 490, 817
BsnI	GGCC	4 cut(s)	223, 351, 405, 655
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	649
Bsp119I	TTCGAA	2 cut(s)	611, 743
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	111, 407, 943
Bsp143I	GATC	4 cut(s)	200, 427, 918, 1047
BspACI	CCGC	7 cut(s)	86, 183, 195, 220, 253, 339, 342
BspANI	GGCC	4 cut(s)	223, 351, 405, 655
BspCNI	CTCAG	2 cut(s)	300, 1000
BspDI	ATCGAT	2 cut(s)	430, 1050
BspFNI	CGCG	2 cut(s)	185, 220
BspLI	GGNNCC	4 cut(s)	90, 385, 405, 406
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	208, 435
BspT104I	TTCGAA	2 cut(s)	611, 743
BspTNI	GGTCTC	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	827, 934, 948
BssECI	CCNNGG	3 cut(s)	172, 806, 836
BssMI	GATC	4 cut(s)	200, 427, 918, 1047
BssNI	GRCGYC	3 cut(s)	180, 299, 332
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	336, 808
Bst4CI	ACNGT	3 cut(s)	422, 860, 904
BstACI	GRCGYC	3 cut(s)	180, 299, 332
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBI	TTCGAA	2 cut(s)	611, 743
BstC8I	GCNNGC	2 cut(s)	189, 193
BstDEI	CTNAG	4 cut(s)	287, 399, 794, 1008
BstF5I	GGATG	4 cut(s)	649, 718, 856, 921
BstFNI	CGCG	2 cut(s)	185, 220
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	4 cut(s)	203, 430, 921, 1050
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	200, 427, 918, 1047
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 348, 823, 947
BstNI	CCWGG	2 cut(s)	336, 808
BstSCI	CCNGG	4 cut(s)	294, 334, 370, 806
BstSLI	GKGCMC	1 cut(s)	407
BstUI	CGCG	2 cut(s)	185, 220
BstV1I	GCAGC	3 cut(s)	70, 141, 144
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BstZI	CGGCCG	1 cut(s)	221
Bsu15I	ATCGAT	2 cut(s)	430, 1050
BsuRI	GGCC	4 cut(s)	223, 351, 405, 655
BsuTUI	ATCGAT	2 cut(s)	430, 1050
BtsCI	GGATG	4 cut(s)	649, 718, 856, 921
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	3 cut(s)	775, 834, 941
Cac8I	GCNNGC	2 cut(s)	189, 193
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	384, 403, 404
ClaI	ATCGAT	2 cut(s)	430, 1050
CseI	GACGC	3 cut(s)	188, 288, 340
CspCI	CAANNNNNGTGG	2 cut(s)	1008, 1043
CviAII	CATG	2 cut(s)	780, 874
DdeI	CTNAG	4 cut(s)	287, 399, 794, 1008
DpnI	GATC	4 cut(s)	202, 429, 920, 1049
DpnII	GATC	4 cut(s)	200, 427, 918, 1047
DraI	TTTAAA	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
EclXI	CGGCCG	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	2 cut(s)	111, 407
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	649
EcoO109I	RGGNCCY	2 cut(s)	403, 404
EcoRII	CCWGG	2 cut(s)	334, 806
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	819
EcoT38I	GRGCYC	2 cut(s)	111, 407
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	783, 877
FaiI	YATR	9 cut(s)	207, 473, 497, 600, 678, 720, 781, 875, 1041
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	2 cut(s)	779, 873
Fnu4HI	GCNGC	6 cut(s)	84, 130, 133, 183, 221, 340
FokI	GGATG	4 cut(s)	656, 725, 863, 928
FriOI	GRGCYC	2 cut(s)	111, 407
Fsp4HI	GCNGC	6 cut(s)	84, 130, 133, 183, 221, 340
FspBI	CTAG	5 cut(s)	80, 188, 527, 606, 632
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	6 cut(s)	84, 130, 133, 183, 221, 340
GsaI	CCCAGC	1 cut(s)	915
HaeIII	GGCC	4 cut(s)	223, 351, 405, 655
HapII	CCGG	3 cut(s)	240, 296, 372
HgaI	GACGC	3 cut(s)	188, 288, 340
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	3 cut(s)	180, 299, 332
Hin1II	CATG	2 cut(s)	783, 877
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	155, 283, 647, 832
HpaII	CCGG	3 cut(s)	240, 296, 372
HphI	GGTGA	3 cut(s)	4, 356, 434
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	106, 160, 547, 666, 837
Hpy188III	TCNNGA	4 cut(s)	325, 387, 693, 925
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	4 cut(s)	182, 229, 304, 760
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	422, 860, 904
HpyCH4V	TGCA	3 cut(s)	27, 817, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 348, 823, 947
HpyF3I	CTNAG	4 cut(s)	287, 399, 794, 1008
Hsp92I	GRCGYC	3 cut(s)	180, 299, 332
Hsp92II	CATG	2 cut(s)	783, 877
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	4 cut(s)	200, 427, 918, 1047
LmnI	GCTCC	3 cut(s)	242, 373, 938
Lsp1109I	GCAGC	3 cut(s)	70, 141, 144
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	5 cut(s)	80, 188, 527, 606, 632
MaeIII	GTNAC	3 cut(s)	344, 854, 925
MalI	GATC	4 cut(s)	202, 429, 920, 1049
MboI	GATC	4 cut(s)	200, 427, 918, 1047
MboII	GAAGA	5 cut(s)	90, 93, 236, 913, 1057
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	3 cut(s)	111, 407, 943
MluCI	AATT	9 cut(s)	28, 162, 269, 446, 548, 553, 739, 751, 784
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	569
Mph1103I	ATGCAT	1 cut(s)	819
MseI	TTAA	3 cut(s)	267, 417, 1083
MspI	CCGG	3 cut(s)	240, 296, 372
MspR9I	CCNGG	4 cut(s)	296, 336, 372, 808
Mva1269I	GAATGC	3 cut(s)	320, 490, 817
MvaI	CCWGG	2 cut(s)	336, 808
MvnI	CGCG	2 cut(s)	185, 220
MwoI	GCNNNNNNNGC	4 cut(s)	188, 348, 823, 947
NciI	CCSGG	2 cut(s)	296, 372
NdeII	GATC	4 cut(s)	200, 427, 918, 1047
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	783, 877
NlaIV	GGNNCC	4 cut(s)	90, 385, 405, 406
NmuCI	GTSAC	3 cut(s)	344, 854, 925
NsiI	ATGCAT	1 cut(s)	819
NspV	TTCGAA	2 cut(s)	611, 743
PaeR7I	CTCGAG	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	1 cut(s)	740
PctI	GAATGC	3 cut(s)	320, 490, 817
PfeI	GAWTC	3 cut(s)	155, 283, 832
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	85, 131, 134, 184, 222, 341
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	334, 806
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	2 cut(s)	334, 806
PspN4I	GGNNCC	4 cut(s)	90, 385, 405, 406
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	384, 403, 404
PspXI	VCTCGAGB	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	267, 417, 1083
SatI	GCNGC	6 cut(s)	84, 130, 133, 183, 221, 340
Sau3AI	GATC	4 cut(s)	200, 427, 918, 1047
Sau96I	GGNCC	3 cut(s)	384, 403, 404
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	4 cut(s)	296, 336, 372, 808
SduI	GDGCHC	3 cut(s)	111, 407, 943
SetI	ASST	9 cut(s)	85, 239, 518, 532, 642, 727, 734, 812, 1040
SfaNI	GCATC	1 cut(s)	592
Sfr274I	CTCGAG	1 cut(s)	649
SfuI	TTCGAA	2 cut(s)	611, 743
SinI	GGWCC	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	649
SmlI	CTYRAG	2 cut(s)	232, 649
SmoI	CTYRAG	2 cut(s)	232, 649
Sse9I	AATT	9 cut(s)	28, 162, 269, 446, 548, 553, 739, 751, 784
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	7 cut(s)	86, 183, 195, 220, 253, 339, 342
SspMI	CTAG	5 cut(s)	80, 188, 527, 606, 632
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	4 cut(s)	294, 334, 370, 806
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	422, 860, 904
TaqI	TCGA	7 cut(s)	153, 326, 430, 611, 650, 743, 1050
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	9 cut(s)	28, 162, 269, 446, 548, 553, 739, 751, 784
TauI	GCSGC	3 cut(s)	185, 223, 342
TfiI	GAWTC	3 cut(s)	155, 283, 832
Tru1I	TTAA	3 cut(s)	267, 417, 1083
Tru9I	TTAA	3 cut(s)	267, 417, 1083
TscAI	CASTG	3 cut(s)	775, 834, 948
TseFI	GTSAC	3 cut(s)	344, 854, 925
TseI	GCWGC	3 cut(s)	83, 129, 132
Tsp45I	GTSAC	3 cut(s)	344, 854, 925
TspDTI	ATGAA	4 cut(s)	28, 476, 488, 768
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	3 cut(s)	775, 834, 948
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
XhoI	CTCGAG	1 cut(s)	649
XspI	CTAG	5 cut(s)	80, 188, 527, 606, 632
Zsp2I	ATGCAT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.