Rroxscaffold_6G00415970

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001977
Physical Location & Seq
Forward (+)
38090123 .. 38091172
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415970.1

Sequence Viewer

Length: 1050 bp
ATGGTCTCATTATCCACTTCCACTCACTTAGCCGCTTTTTCCCTGCTCATTTTCATCCTCAGCGCCTCAGCTGCAGACTCAAATTCCTCATTTTCTTTCACTAAGTTTGGTAAAGATCCAAACTTTGAGTCCAATATTGCGCTGTATGGAGATGCCAAGATTGTTAGTGGTGCAGTTCAGCTCACTAGTTCAGTGAGCTCAAGTTCTGGGCGAGTCATGTACAAGAAACCCCTCAAGCTTGGTGAAGGTAAGCCTCAGAAATCAGTGTCTTTTTCCAGTCACTTCACTCTGTCTATGTCCAAAGAAAATGGGGATGGTTTGGCCTTTGTTGTAGTTCCAAGTGGTTTGAATCTTAGCCTGTTTGGTAATAGCTCTTTTGGGCTTGAAATGGGGTATGGGAAAAGTAAATTGAAGGTTGTTGCAGTTAAGTTGAAGTATGATTACTTGGTTGGTAAGGTCCATGTGGGGATTGATGTGGGTAGTTCTTTATCAGCTAGAGTTAACAATGCTTCAGCTATCAAATTGAATCTAACTAGTGGTGATAGAACAAATGCTTGGATTGATTATGAAGCGGGTTCGAAAAGAGTTGAAGTGAGATTGAGTCAATTGGGTGGTTTAAGGCCAGCTGATCCTTTGCTGTGGTACCCAATTGACTTGTCAAAATTGTGGGGAGATGAGAAAGTGTTTGTGGGCTTAAGCGCGCAGAATAGGAACTCTTCTCAAACTTGTTCCATATATTCATGGAGCTTCGAGCAAAGGCACGTTCCGGACTGGATGCATTCAGAGCCACTAGATCCTAAGACCTTATCTAAGAGCTCGAAACCGGTGACAGCTGAGAAGAGAAAGGATTGTGTATTGCGGGCTGTTGCTGCAATGGTTCTGGGAGTTGCTTGTGGAGCATTGGCATCATACATTGTGTTGTATTTGTGGAGAATCTTTGGTAATAGGCGTCCGGTGGTGCCAGAAGAGTATGCGATGCAGCCTCAACAATTCGAGTACAAGAAAATGAAGGTAGTGGTAGATAAATCCATCGAAGATGGAAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

349

Amino Acids

38.11

Weight (kDa)

9.44

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 263 5.3e-51 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 2 cut(s) 642, 958
AccII CGCG 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 766
AciI CCGC 3 cut(s) 33, 572, 859
AclWI GGATC 3 cut(s) 110, 623, 788
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 3 cut(s) 221, 644, 998
AflII CTTAAG 1 cut(s) 694
AgeI ACCGGT 1 cut(s) 823
AgsI TTSAA 6 cut(s) 349, 386, 412, 433, 526, 590
AhlI ACTAGT 2 cut(s) 185, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
Alw21I GWGCWC 2 cut(s) 200, 818
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 3 cut(s) 110, 623, 788
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 2 cut(s) 321, 620
ApeKI GCWGC 3 cut(s) 71, 869, 979
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsiGI ACCGGT 1 cut(s) 823
Asp718I GGTACC 1 cut(s) 642
AspLEI GCGC 4 cut(s) 65, 142, 701, 703
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 254, 551, 838
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 457
BanI GGYRCC 2 cut(s) 642, 958
BanII GRGCYC 2 cut(s) 200, 818
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
Bbv12I GWGCWC 2 cut(s) 200, 818
BbvCI CCTCAGC 2 cut(s) 59, 67
BbvI GCAGC 3 cut(s) 58, 856, 991
BccI CCATC 3 cut(s) 308, 1031, 1037
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 2 cut(s) 185, 533
BfaI CTAG 4 cut(s) 186, 495, 534, 791
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 694
BisI GCNGC 4 cut(s) 33, 72, 870, 980
BlsI GCNGC 4 cut(s) 34, 73, 871, 981
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 644, 960
BmsI GCATC 4 cut(s) 142, 765, 914, 966
Bpu10I CCTNAGC 2 cut(s) 59, 67
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 184, 218
BsaHI GRCGYC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 3 cut(s) 766, 823, 952
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 2 cut(s) 276, 776
Bse3DI GCAATG 1 cut(s) 879
BseAI TCCGGA 1 cut(s) 766
BseGI GGATG 3 cut(s) 54, 319, 780
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 4 cut(s) 73, 81, 269, 825
BseNI ACTGG 2 cut(s) 276, 776
BsePI GCGCGC 1 cut(s) 699
BseXI GCAGC 3 cut(s) 58, 856, 991
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 2 cut(s) 323, 622
BshNI GGYRCC 2 cut(s) 642, 958
BshTI ACCGGT 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 200, 818
BsiSI CCGG 3 cut(s) 767, 824, 953
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 323, 622
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 200, 818
Bsp13I TCCGGA 1 cut(s) 766
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 115, 628, 793
BspACI CCGC 3 cut(s) 33, 572, 859
BspANI GGCC 2 cut(s) 323, 622
BspCNI CTCAG 4 cut(s) 72, 80, 268, 826
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 2 cut(s) 644, 960
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 110, 623, 788
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 642, 958
BspTI CTTAAG 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 1 cut(s) 823
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 2 cut(s) 276, 776
BssAI RCCGGY 1 cut(s) 823
BssHII GCGCGC 1 cut(s) 699
BssMI GATC 3 cut(s) 115, 628, 793
BssNI GRCGYC 1 cut(s) 949
Bst6I CTCTTC 3 cut(s) 721, 833, 960
BstACI GRCGYC 1 cut(s) 949
BstAFI CTTAAG 1 cut(s) 694
BstAUI TGTACA 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 624, 701, 861
BstDEI CTNAG 9 cut(s) 28, 59, 67, 102, 255, 353, 798, 810, 834
BstF5I GGATG 3 cut(s) 54, 319, 780
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 4 cut(s) 65, 142, 701, 703
BstKTI GATC 3 cut(s) 118, 631, 796
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 3 cut(s) 115, 628, 793
BstMWI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 3 cut(s) 58, 856, 991
BstX2I RGATCY 2 cut(s) 115, 793
BstYI RGATCY 2 cut(s) 115, 793
BsuRI GGCC 2 cut(s) 323, 622
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 3 cut(s) 54, 319, 780
BtsIMutI CAGTG 2 cut(s) 198, 270
Cac8I GCNNGC 3 cut(s) 624, 701, 861
CfoI GCGC 4 cut(s) 65, 142, 701, 703
Cfr10I RCCGGY 1 cut(s) 823
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 220, 643, 997
CspAI ACCGGT 1 cut(s) 823
CviAII CATG 3 cut(s) 217, 461, 741
CviQI GTAC 3 cut(s) 220, 643, 997
DdeI CTNAG 9 cut(s) 28, 59, 67, 102, 255, 353, 798, 810, 834
DpnI GATC 3 cut(s) 117, 630, 795
DpnII GATC 3 cut(s) 115, 628, 793
Eam1104I CTCTTC 3 cut(s) 721, 833, 960
EarI CTCTTC 3 cut(s) 721, 833, 960
Ecl136II GAGCTC 2 cut(s) 198, 816
Eco24I GRGCYC 2 cut(s) 200, 818
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 198, 816
Eco57I CTGAAG 1 cut(s) 495
EcoICRI GAGCTC 2 cut(s) 198, 816
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 200, 818
FaeI CATG 3 cut(s) 220, 464, 744
FatI CATG 3 cut(s) 216, 460, 740
FauI CCCGC 2 cut(s) 565, 852
Fnu4HI GCNGC 4 cut(s) 33, 72, 870, 980
FokI GGATG 3 cut(s) 41, 326, 787
FriOI GRGCYC 2 cut(s) 200, 818
Fsp4HI GCNGC 4 cut(s) 33, 72, 870, 980
FspBI CTAG 4 cut(s) 186, 495, 534, 791
GlaI GCGC 4 cut(s) 64, 141, 700, 702
GluI GCNGC 4 cut(s) 33, 72, 870, 980
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 323, 622
HapII CCGG 3 cut(s) 767, 824, 953
HgaI GACGC 1 cut(s) 938
HhaI GCGC 4 cut(s) 65, 142, 701, 703
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 3 cut(s) 220, 464, 744
Hin6I GCGC 4 cut(s) 63, 140, 699, 701
HinP1I GCGC 4 cut(s) 63, 140, 699, 701
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 7 cut(s) 77, 128, 213, 349, 526, 601, 933
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 3 cut(s) 767, 824, 953
HphI GGTGA 3 cut(s) 254, 551, 838
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 2 cut(s) 258, 784
Hpy188III TCNNGA 1 cut(s) 767
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 3 cut(s) 239, 406, 1003
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 6 cut(s) 74, 173, 422, 778, 872, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
HpyF3I CTNAG 9 cut(s) 28, 59, 67, 102, 255, 353, 798, 810, 834
HpySE526I ACGT 1 cut(s) 762
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 3 cut(s) 220, 464, 744
HspAI GCGC 4 cut(s) 63, 140, 699, 701
Kpn2I TCCGGA 1 cut(s) 766
KpnI GGTACC 1 cut(s) 646
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 3 cut(s) 115, 628, 793
LmnI GCTCC 2 cut(s) 744, 896
Lsp1109I GCAGC 3 cut(s) 58, 856, 991
LweI GCATC 4 cut(s) 142, 765, 914, 966
MaeI CTAG 4 cut(s) 186, 495, 534, 791
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 2 cut(s) 278, 826
MalI GATC 3 cut(s) 117, 630, 795
MboI GATC 3 cut(s) 115, 628, 793
MboII GAAGA 4 cut(s) 708, 850, 977, 1046
MfeI CAATTG 2 cut(s) 605, 648
MflI RGATCY 2 cut(s) 115, 793
MhlI GDGCHC 2 cut(s) 200, 818
MluCI AATT 7 cut(s) 82, 407, 521, 605, 648, 662, 989
MlyI GAGTC 4 cut(s) 71, 137, 222, 610
MnlI CCTC 6 cut(s) 68, 76, 97, 242, 264, 993
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 766
MseI TTAA 4 cut(s) 426, 501, 617, 695
MspA1I CMGCKG 3 cut(s) 71, 626, 833
MspCI CTTAAG 1 cut(s) 694
MspI CCGG 3 cut(s) 767, 824, 953
MunI CAATTG 2 cut(s) 605, 648
Mva1269I GAATGC 1 cut(s) 778
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 4 cut(s) 71, 784, 869, 896
NdeII GATC 3 cut(s) 115, 628, 793
NlaIII CATG 3 cut(s) 220, 464, 744
NlaIV GGNNCC 2 cut(s) 644, 960
NmuCI GTSAC 2 cut(s) 278, 826
NsiI ATGCAT 1 cut(s) 780
NspV TTCGAA 1 cut(s) 578
PauI GCGCGC 1 cut(s) 699
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 3 cut(s) 349, 526, 933
PinAI ACCGGT 1 cut(s) 823
PkrI GCNGC 4 cut(s) 34, 73, 871, 981
PleI GAGTC 4 cut(s) 71, 136, 221, 609
PpsI GAGTC 4 cut(s) 71, 136, 221, 609
Psp124BI GAGCTC 2 cut(s) 200, 818
PspN4I GGNNCC 2 cut(s) 644, 960
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 115, 793
PteI GCGCGC 1 cut(s) 699
PvuII CAGCTG 3 cut(s) 71, 626, 833
RsaI GTAC 3 cut(s) 221, 644, 998
RsaNI GTAC 3 cut(s) 220, 643, 997
SacI GAGCTC 2 cut(s) 200, 818
SaqAI TTAA 4 cut(s) 426, 501, 617, 695
SatI GCNGC 4 cut(s) 33, 72, 870, 980
Sau3AI GATC 3 cut(s) 115, 628, 793
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 4 cut(s) 71, 137, 222, 610
SduI GDGCHC 2 cut(s) 200, 818
SfaNI GCATC 4 cut(s) 142, 765, 914, 966
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 3 cut(s) 199, 233, 694
SmoI CTYRAG 3 cut(s) 199, 233, 694
SpeI ACTAGT 2 cut(s) 185, 533
Sse9I AATT 7 cut(s) 82, 407, 521, 605, 648, 662, 989
SsiI CCGC 3 cut(s) 33, 572, 859
SspI AATATT 1 cut(s) 136
SspMI CTAG 4 cut(s) 186, 495, 534, 791
SstI GAGCTC 2 cut(s) 200, 818
TaiI ACGT 1 cut(s) 765
TaqI TCGA 5 cut(s) 578, 750, 818, 993, 1032
TasI AATT 7 cut(s) 82, 407, 521, 605, 648, 662, 989
TatI WGTACW 2 cut(s) 219, 996
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 349, 526, 933
Tru1I TTAA 4 cut(s) 426, 501, 617, 695
Tru9I TTAA 4 cut(s) 426, 501, 617, 695
TscAI CASTG 2 cut(s) 198, 270
TseFI GTSAC 2 cut(s) 278, 826
TseI GCWGC 3 cut(s) 71, 869, 979
Tsp45I GTSAC 2 cut(s) 278, 826
TspDTI ATGAA 4 cut(s) 43, 582, 729, 1022
TspRI CASTG 2 cut(s) 198, 270
Vha464I CTTAAG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 1 cut(s) 82
XspI CTAG 4 cut(s) 186, 495, 534, 791
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.